Variant report

Variant	rs36107855
Chromosome Location	chr2:30389006-30389007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:30387277..30390293-chr2:30882898..30886661,5	K562	blood:
2	chr2:30385694..30390672-chr2:30453095..30455897,4	K562	blood:
3	chr2:30337916..30339804-chr2:30387115..30389293,2	MCF-7	breast:
4	chr2:30388042..30391287-chr2:30453374..30456490,3	K562	blood:
5	chr2:30388130..30392158-chr2:30882898..30886661,6	K562	blood:
6	chr2:30368086..30373772-chr2:30384153..30389116,5	K562	blood:

Variant related genes	Relation type
ENSG00000213626	Chromatin interaction
ENSG00000119801	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13014039	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924305	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35457834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30373200-30396400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:30382000-30389200	Weak transcription	Colonic Mucosa	Colon
3	chr2:30382400-30390400	Weak transcription	Esophagus	oesophagus
4	chr2:30382400-30392000	Weak transcription	Gastric	stomach
5	chr2:30382400-30393200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:30382400-30395600	Weak transcription	Aorta	Aorta
7	chr2:30382400-30400400	Weak transcription	Left Ventricle	heart
8	chr2:30382400-30400600	Weak transcription	Lung	lung
9	chr2:30382400-30400600	Weak transcription	Spleen	Spleen
10	chr2:30383400-30392000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr2:30383400-30392200	Weak transcription	Thymus	Thymus
12	chr2:30383400-30393400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:30383400-30395200	Weak transcription	Fetal Heart	heart
14	chr2:30383600-30400800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:30384600-30390400	Weak transcription	Brain Substantia Nigra	brain
16	chr2:30384600-30392600	Weak transcription	Brain Angular Gyrus	brain
17	chr2:30384800-30390400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr2:30385800-30391600	Weak transcription	Adipose Nuclei	Adipose
19	chr2:30386200-30391400	Weak transcription	Primary T cells from cord blood	blood
20	chr2:30386200-30392600	Weak transcription	Fetal Brain Female	brain
21	chr2:30387400-30389800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr2:30387800-30389800	Weak transcription	Placenta	Placenta
23	chr2:30387800-30390600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr2:30387800-30391000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:30388200-30389200	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr2:30388200-30389400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr2:30388200-30391800	Weak transcription	Liver	Liver
28	chr2:30388400-30390800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr2:30388400-30391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:30388400-30395400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr2:30388400-30401000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr2:30388800-30391800	Weak transcription	Fetal Lung	lung
33	chr2:30388800-30401400	Weak transcription	HSMMtube	muscle
34	chr2:30388800-30407200	Weak transcription	Brain Hippocampus Middle	brain
35	chr2:30389000-30389200	Enhancers	Pancreas	Pancrea
36	chr2:30389000-30389200	Enhancers	Rectal Mucosa Donor 31	rectum

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