Variant report

Variant	rs35463987
Chromosome Location	chr5:54066297-54066298
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:53812258..53815199-chr5:54063024..54066576,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178996	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs13436904	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13436919	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17346285	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2121130	0.92[EUR][1000 genomes]
rs2166355	0.93[EUR][1000 genomes]
rs4274943	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4355479	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4380600	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4425466	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4472223	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4526067	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4572962	0.98[EUR][1000 genomes]
rs55728436	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55944106	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56145198	0.90[EUR][1000 genomes]
rs56202300	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56207018	0.98[EUR][1000 genomes]
rs56298453	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56386053	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57059470	0.88[EUR][1000 genomes]
rs57348772	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60775366	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6450249	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66533726	0.93[EUR][1000 genomes]
rs66599423	0.94[EUR][1000 genomes]
rs66812968	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66955270	0.81[AMR][1000 genomes]
rs67510332	0.93[EUR][1000 genomes]
rs6867643	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6876730	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6897534	0.90[EUR][1000 genomes]
rs72757444	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72757446	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72760107	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7710436	0.98[EUR][1000 genomes]
rs7733091	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7734384	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54060600-54070000	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:54061000-54070400	Weak transcription	NHLF	lung
3	chr5:54061200-54067000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:54064200-54067000	Weak transcription	Primary B cells from peripheral blood	blood

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