Variant report

Variant	rs7733091
Chromosome Location	chr5:54117762-54117763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:53951713..53952512-chr5:54117217..54117777,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs13156560	0.83[EUR][1000 genomes]
rs13173142	0.82[EUR][1000 genomes]
rs13183019	0.87[EUR][1000 genomes]
rs13183813	0.83[EUR][1000 genomes]
rs13436904	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13436919	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34211924	0.83[EUR][1000 genomes]
rs34503985	0.83[EUR][1000 genomes]
rs34563029	0.88[EUR][1000 genomes]
rs34619620	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34728968	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35046115	0.81[EUR][1000 genomes]
rs35409466	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35463987	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35805787	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35839938	0.88[EUR][1000 genomes]
rs35985754	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36000196	0.83[EUR][1000 genomes]
rs36009662	0.85[EUR][1000 genomes]
rs3935814	0.88[EUR][1000 genomes]
rs3935815	0.85[EUR][1000 genomes]
rs4274943	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4301189	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4355479	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4380600	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4425466	0.95[CEU][hapmap]
rs4472223	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4526067	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4565175	0.88[EUR][1000 genomes]
rs4572962	0.90[CEU][hapmap]
rs55728436	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55903850	0.80[EUR][1000 genomes]
rs55944106	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56145198	0.90[EUR][1000 genomes]
rs56298453	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57059470	0.86[EUR][1000 genomes]
rs57348772	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60775366	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6450249	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66525543	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66812968	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66928876	0.82[EUR][1000 genomes]
rs66955270	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67500010	0.83[EUR][1000 genomes]
rs6876730	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72757444	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72757446	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72760107	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7734384	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54109400-54117800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:54115400-54118000	Enhancers	HUVEC	blood vessel
3	chr5:54115400-54121200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:54115800-54119800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:54116000-54117800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:54116000-54118000	Enhancers	Fetal Heart	heart
7	chr5:54116000-54121000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:54116600-54119200	Weak transcription	NHDF-Ad	bronchial
9	chr5:54117000-54118400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:54117000-54118600	Enhancers	Placenta	Placenta
11	chr5:54117000-54119600	Weak transcription	Osteobl	bone
12	chr5:54117000-54119800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:54117200-54118000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:54117200-54118000	Enhancers	Fetal Kidney	kidney
15	chr5:54117200-54138000	Weak transcription	Aorta	Aorta
16	chr5:54117600-54118000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:54117600-54118200	Enhancers	Left Ventricle	heart
18	chr5:54117600-54118200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr5:54117600-54118600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:54117600-54126800	Weak transcription	NHLF	lung

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