Variant report

Variant	rs35985754
Chromosome Location	chr5:54136002-54136003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:54131587..54134276-chr5:54135808..54138723,2	K562	blood:
2	chr5:53813511..53816298-chr5:54135722..54138422,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178996	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13156560	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13173142	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13183019	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13183813	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34211924	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34503985	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34563029	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34619620	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34728968	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35046115	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35409466	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35805787	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35839938	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36000196	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36009662	0.94[EUR][1000 genomes]
rs3935814	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3935815	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4301189	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4565175	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55903850	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66525543	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66928876	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66955270	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67500010	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72757444	0.82[AMR][1000 genomes]
rs72757446	0.82[AMR][1000 genomes]
rs72760107	0.82[AMR][1000 genomes]
rs7733091	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54117200-54138000	Weak transcription	Aorta	Aorta
2	chr5:54131000-54140800	Weak transcription	Adipose Nuclei	Adipose
3	chr5:54132000-54137000	Weak transcription	Placenta	Placenta
4	chr5:54132000-54140800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:54132400-54136800	Weak transcription	Gastric	stomach
6	chr5:54133400-54138400	Weak transcription	NHLF	lung
7	chr5:54133800-54140600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:54134800-54140200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:54135000-54140000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:54135000-54140400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:54135800-54137600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:54135800-54140800	Weak transcription	Fetal Intestine Large	intestine
13	chr5:54136000-54137200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:54136000-54140800	Weak transcription	Liver	Liver

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