Variant report
| Variant | rs35805787 |
|---|---|
| Chromosome Location | chr5:54153034-54153035 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-GZMK-3 | chr5:54152968-54153294 | NONHSAT101456 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs13156560 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs13173142 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs13183019 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs13183813 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs34211924 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs34503985 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs34563029 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs34619620 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34728968 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs35046115 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35409466 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs35839938 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs35985754 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs36000196 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs36009662 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3935814 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3935815 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4301189 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4565175 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs55903850 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs66525543 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs66928876 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs66955270 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs67500010 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7733091 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830300 | chr5:54056300-54257344 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv3358092 | chr5:54077828-54189150 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv964853 | chr5:54152984-54154835 | ZNF genes & repeats | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
