Variant report

Variant	rs35487566
Chromosome Location	chr9:15146207-15146208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1323597	0.91[AMR][1000 genomes]
rs4741466	0.81[EUR][1000 genomes]
rs4741471	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72614228	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9792685	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15137200-15156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:15137400-15147000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:15138800-15146600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:15138800-15146800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:15139000-15146600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:15139600-15146600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:15140200-15146600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:15141000-15154400	Weak transcription	Fetal Stomach	stomach
9	chr9:15143200-15146400	Weak transcription	Fetal Thymus	thymus
10	chr9:15144600-15146600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr9:15144600-15146600	Enhancers	Fetal Brain Female	brain
12	chr9:15144800-15146600	Weak transcription	Fetal Kidney	kidney
13	chr9:15145000-15146400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:15145000-15150600	Weak transcription	HMEC	breast
15	chr9:15145800-15147000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:15145800-15147200	Enhancers	Fetal Brain Male	brain
17	chr9:15145800-15147400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:15146000-15146400	Enhancers	Brain Germinal Matrix	brain
19	chr9:15146200-15146600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:15146200-15146600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:15146200-15146600	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr9:15146200-15147200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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