Variant report

Variant	rs4741466
Chromosome Location	chr9:15123960-15123961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35487566	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15115000-15124400	Enhancers	Fetal Thymus	thymus
2	chr9:15118000-15126800	Weak transcription	Fetal Heart	heart
3	chr9:15118400-15127000	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:15122000-15124600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:15122000-15124600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:15122000-15124600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:15122000-15124600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr9:15122000-15124600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:15122000-15125000	Enhancers	Thymus	Thymus
10	chr9:15122200-15124400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:15122400-15124600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:15123800-15124200	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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