Variant report

Variant	rs35494990
Chromosome Location	chr12:9900760-9900761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1008611	0.89[ASN][1000 genomes]
rs1051065	0.81[ASN][1000 genomes]
rs10743821	0.89[ASN][1000 genomes]
rs10743822	0.89[ASN][1000 genomes]
rs10772119	0.81[ASN][1000 genomes]
rs10772120	0.81[ASN][1000 genomes]
rs11052718	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11052785	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12368445	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12578698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12582616	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1990533	0.89[ASN][1000 genomes]
rs2192433	0.89[ASN][1000 genomes]
rs2192434	0.89[ASN][1000 genomes]
rs2192435	0.89[ASN][1000 genomes]
rs2192439	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2401396	0.89[ASN][1000 genomes]
rs2401397	0.81[ASN][1000 genomes]
rs2401398	0.81[ASN][1000 genomes]
rs3136564	0.83[ASN][1000 genomes]
rs3136577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3176792	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3176800	0.81[ASN][1000 genomes]
rs3176802	0.81[ASN][1000 genomes]
rs3176804	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3176806	0.81[ASN][1000 genomes]
rs3176807	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3176808	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34201389	0.89[ASN][1000 genomes]
rs34279883	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763835	0.89[ASN][1000 genomes]
rs61913428	0.89[ASN][1000 genomes]
rs6416258	0.81[ASN][1000 genomes]
rs704223	0.81[ASN][1000 genomes]
rs7954062	0.84[ASN][1000 genomes]
rs929615	0.81[ASN][1000 genomes]
rs982511	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv976572	chr12:9896625-9906830	Genic enhancers ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9892800-9903200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr12:9893400-9910800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:9895600-9906000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr12:9895800-9903200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr12:9896200-9903200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr12:9896400-9903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr12:9896400-9911000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr12:9896600-9903000	Weak transcription	Primary B cells from cord blood	blood
9	chr12:9896800-9900800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr12:9896800-9902800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr12:9896800-9903000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr12:9896800-9903000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:9896800-9903200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr12:9896800-9903200	Weak transcription	GM12878-XiMat	blood
15	chr12:9896800-9903400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr12:9897200-9902800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:9897200-9903000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr12:9897400-9902800	Weak transcription	Primary T cells from cord blood	blood
19	chr12:9898000-9903000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr12:9898000-9903200	Weak transcription	HUVEC	blood vessel
21	chr12:9898000-9903800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr12:9898200-9903000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr12:9898400-9903200	Weak transcription	Fetal Kidney	kidney
24	chr12:9900000-9903200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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