Variant report

Variant	rs35509063
Chromosome Location	chr6:38498672-38498673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12524226	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12525647	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12526648	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527568	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12528814	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12529497	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12529875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13200902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203189	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13204248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13205679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215050	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13217020	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17590777	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2395700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34222507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34222775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34903004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35916993	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56867817	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60138764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60289806	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67863657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909533	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923594	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6925140	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72853498	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv10306	chr6:38495659-38504443	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38476600-38499800	Weak transcription	Pancreas	Pancrea
2	chr6:38476800-38498800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:38479000-38509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:38485400-38500400	Weak transcription	Gastric	stomach
5	chr6:38487000-38518600	Weak transcription	Primary T cells from cord blood	blood
6	chr6:38487800-38502600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:38489000-38501000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:38490200-38499600	Weak transcription	Brain Angular Gyrus	brain
9	chr6:38490600-38503400	Weak transcription	Fetal Lung	lung
10	chr6:38492800-38508000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:38494200-38499600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:38494200-38499800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:38494400-38499800	Weak transcription	Left Ventricle	heart
14	chr6:38494400-38499800	Weak transcription	Spleen	Spleen
15	chr6:38494400-38500200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:38494400-38513800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:38494400-38515400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:38494400-38518800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:38494400-38524200	Weak transcription	Aorta	Aorta
20	chr6:38494800-38499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:38494800-38522600	Weak transcription	Ovary	ovary
22	chr6:38495000-38521800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:38496000-38502400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:38496200-38498800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
25	chr6:38496200-38517600	Weak transcription	Esophagus	oesophagus
26	chr6:38496400-38500000	Weak transcription	Right Ventricle	heart
27	chr6:38496600-38539600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:38496800-38521600	Weak transcription	Lung	lung
29	chr6:38497000-38517600	Weak transcription	Small Intestine	intestine
30	chr6:38497000-38538800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:38497000-38539400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr6:38497400-38500200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:38497400-38502000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:38498400-38518400	Weak transcription	Primary B cells from cord blood	blood
35	chr6:38498600-38499400	Enhancers	HUVEC	blood vessel
36	chr6:38498600-38499800	Weak transcription	Fetal Intestine Small	intestine

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