Variant report

Variant	rs6925140
Chromosome Location	chr6:38515120-38515121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12524226	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12525647	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12526648	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12527568	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12528814	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12529497	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12529875	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12529981	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13200466	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13200902	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13203189	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13204248	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13205679	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13214868	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13215050	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13217020	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13219695	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13219887	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17590777	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2395700	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34222507	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34222775	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34903004	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35509063	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35916993	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56867817	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60138764	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60289806	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67863657	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6909533	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6923594	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72853498	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38487000-38518600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:38494400-38515400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:38494400-38518800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:38494400-38524200	Weak transcription	Aorta	Aorta
5	chr6:38494800-38522600	Weak transcription	Ovary	ovary
6	chr6:38495000-38521800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:38496200-38517600	Weak transcription	Esophagus	oesophagus
8	chr6:38496600-38539600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:38496800-38521600	Weak transcription	Lung	lung
10	chr6:38497000-38517600	Weak transcription	Small Intestine	intestine
11	chr6:38497000-38538800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:38497000-38539400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:38498400-38518400	Weak transcription	Primary B cells from cord blood	blood
14	chr6:38500600-38517600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:38500600-38517600	Weak transcription	Right Ventricle	heart
16	chr6:38500600-38518600	Weak transcription	Left Ventricle	heart
17	chr6:38500800-38520800	Weak transcription	Fetal Intestine Small	intestine
18	chr6:38501400-38518600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:38506800-38517000	Weak transcription	Brain Anterior Caudate	brain
20	chr6:38508200-38522200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:38510200-38522200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:38510400-38522600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:38510600-38546800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:38511600-38517000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:38511600-38522800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:38511800-38516800	Weak transcription	Fetal Stomach	stomach
27	chr6:38512000-38517200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:38512200-38519000	Weak transcription	Fetal Intestine Large	intestine
29	chr6:38512200-38519000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:38512400-38519400	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:38512600-38515200	Weak transcription	Placenta	Placenta
32	chr6:38513000-38522400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:38513000-38539200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:38513200-38515600	Weak transcription	Adipose Nuclei	Adipose
35	chr6:38514200-38539400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:38514800-38515600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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