Variant report

Variant	rs35509690
Chromosome Location	chr7:8055948-8055949
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12113109	0.94[EUR][1000 genomes]
rs12702689	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13222222	0.89[ASN][1000 genomes]
rs13222718	0.94[EUR][1000 genomes]
rs13223417	0.89[ASN][1000 genomes]
rs13223995	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13225545	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13237185	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13239966	0.87[ASN][1000 genomes]
rs13240739	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13245917	0.89[ASN][1000 genomes]
rs34059590	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34156160	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34318095	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34438930	0.94[EUR][1000 genomes]
rs34475980	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34746652	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35009545	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35044198	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs35108922	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35143180	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35146192	0.94[EUR][1000 genomes]
rs35149843	0.94[EUR][1000 genomes]
rs35171936	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35240411	1.00[ASN][1000 genomes]
rs35394048	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs35425218	0.94[EUR][1000 genomes]
rs35567393	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35627160	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35641104	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36015287	0.82[ASN][1000 genomes]
rs36022646	0.96[ASN][1000 genomes]
rs36028057	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6969431	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs71533384	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs71533385	0.96[ASN][1000 genomes]
rs715377	0.96[EUR][1000 genomes]
rs7793278	0.94[EUR][1000 genomes]
rs7801299	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1030180	chr7:7860424-8059221	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv3346837	chr7:7915187-8068557	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv518779	chr7:8055664-8077359	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:8036400-8077400	Weak transcription	Right Ventricle	heart
2	chr7:8036600-8057200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:8036600-8064400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:8036600-8064400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:8036600-8074600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:8038000-8066000	Weak transcription	Pancreas	Pancrea
7	chr7:8038400-8066000	Weak transcription	Spleen	Spleen
8	chr7:8041600-8064400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:8041600-8095000	Weak transcription	Gastric	stomach
10	chr7:8041800-8075400	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:8042800-8064400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:8043000-8099200	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:8043600-8068400	Weak transcription	NH-A	brain
14	chr7:8043800-8064400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:8043800-8064600	Weak transcription	Small Intestine	intestine
16	chr7:8044000-8062600	Weak transcription	Fetal Intestine Small	intestine
17	chr7:8044200-8063800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:8044200-8066000	Weak transcription	Lung	lung
19	chr7:8044600-8074400	Weak transcription	Brain Angular Gyrus	brain
20	chr7:8044800-8064400	Weak transcription	Aorta	Aorta
21	chr7:8045200-8066000	Weak transcription	Fetal Brain Male	brain
22	chr7:8046800-8062800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:8046800-8064200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:8046800-8064400	Weak transcription	Ovary	ovary
25	chr7:8046800-8066000	Weak transcription	Left Ventricle	heart
26	chr7:8046800-8074400	Weak transcription	Brain Substantia Nigra	brain
27	chr7:8047000-8062200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr7:8047000-8064000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr7:8047000-8066000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr7:8047200-8059200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:8047200-8062200	Weak transcription	Brain Anterior Caudate	brain
32	chr7:8047200-8062200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr7:8047200-8063800	Weak transcription	Fetal Lung	lung
34	chr7:8047200-8064000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:8047200-8064000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr7:8047200-8064000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:8047200-8064400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr7:8047200-8065200	Weak transcription	Fetal Kidney	kidney
39	chr7:8047200-8065400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr7:8047200-8066000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr7:8047200-8066200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr7:8047400-8062400	Weak transcription	Brain Germinal Matrix	brain
43	chr7:8047400-8063400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr7:8047400-8063400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr7:8047400-8064000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr7:8047400-8064400	Weak transcription	Fetal Brain Female	brain
47	chr7:8047400-8064400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr7:8047400-8066000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr7:8047400-8066000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr7:8047400-8066000	Weak transcription	Rectal Mucosa Donor 31	rectum

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