Variant report

Variant	rs36028057
Chromosome Location	chr7:8032765-8032766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:8016755..8018272-chr7:8032373..8035088,2	K562	blood:
2	chr7:8024866..8028296-chr7:8029359..8032813,3	K562	blood:
3	chr7:8008420..8010478-chr7:8031319..8034117,3	K562	blood:
4	chr7:8007363..8010547-chr7:8028829..8033493,5	MCF-7	breast:
5	chr7:8031148..8034343-chr7:8035102..8037694,3	MCF-7	breast:
6	chr7:8008789..8010478-chr7:8031319..8034117,2	K562	blood:
7	chr7:8031024..8033296-chr7:8034611..8036346,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233108	Chromatin interaction
ENSG00000106415	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12702689	0.86[ASN][1000 genomes]
rs13222222	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13223417	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13223995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13225545	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13237185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13239966	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13240739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13242904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13245917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34059590	0.93[ASN][1000 genomes]
rs34156160	0.90[ASN][1000 genomes]
rs34318095	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34475980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34746652	0.93[ASN][1000 genomes]
rs34783749	1.00[EUR][1000 genomes]
rs34955320	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35009545	0.90[ASN][1000 genomes]
rs35044198	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35108922	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35143180	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs35171936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35225784	1.00[EUR][1000 genomes]
rs35240411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35394048	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35509690	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs35567393	0.90[ASN][1000 genomes]
rs35572840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35627160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35630009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35641104	0.86[ASN][1000 genomes]
rs36015287	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36022646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58769447	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6969431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71533384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71533385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71533389	1.00[EUR][1000 genomes]
rs71533390	1.00[EUR][1000 genomes]
rs7800750	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7801299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7807433	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1030180	chr7:7860424-8059221	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv3346837	chr7:7915187-8068557	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1020161	chr7:7929384-8047553	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:8015000-8045000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:8027600-8034800	Weak transcription	Fetal Thymus	thymus
3	chr7:8029000-8039000	Weak transcription	Thymus	Thymus
4	chr7:8029200-8043600	Weak transcription	Small Intestine	intestine
5	chr7:8029600-8035200	ZNF genes & repeats	GM12878-XiMat	blood
6	chr7:8029600-8037200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:8029800-8033800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:8029800-8046400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:8029800-8049000	Weak transcription	Fetal Heart	heart
10	chr7:8031200-8033400	ZNF genes & repeats	Liver	Liver
11	chr7:8031400-8032800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:8032000-8035600	Weak transcription	Hela-S3	cervix
13	chr7:8032600-8033200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:8032600-8034400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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