Variant report

Variant	rs35541195
Chromosome Location	chr19:40196611-40196612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1034995	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10402500	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10406233	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10407799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10409161	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10422830	0.95[EUR][1000 genomes]
rs11666249	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11879717	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11882595	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12979857	0.96[EUR][1000 genomes]
rs1990235	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2108686	0.89[EUR][1000 genomes]
rs34877480	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs375688	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs385563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs389708	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs390406	0.89[EUR][1000 genomes]
rs395969	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs403831	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs410034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs412211	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs413216	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs420297	0.93[EUR][1000 genomes]
rs57954673	0.99[EUR][1000 genomes]
rs58029135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71356865	0.94[EUR][1000 genomes]
rs71356870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7248035	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7253554	0.99[EUR][1000 genomes]
rs7254020	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8101919	0.97[EUR][1000 genomes]
rs886993	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057361	chr19:40123868-40310996	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1061361	chr19:40131820-40310996	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv579511	chr19:40132825-40310497	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1062394	chr19:40133229-40310186	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv544004	chr19:40133229-40310186	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv3397881	chr19:40150495-40199437	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1059691	chr19:40168862-40306373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv544005	chr19:40168862-40306373	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	esv3332670	chr19:40181720-40297955	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40194400-40198000	Flanking Active TSS	GM12878-XiMat	blood
2	chr19:40195000-40196800	Active TSS	Placenta	Placenta
3	chr19:40195000-40198000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr19:40195400-40197400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr19:40195400-40197800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr19:40195600-40199400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr19:40195800-40197800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr19:40196000-40197200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr19:40196200-40197200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr19:40196200-40197400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr19:40196200-40197600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr19:40196200-40197600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr19:40196400-40196800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:40196400-40197400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr19:40196400-40197600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr19:40196600-40196800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr19:40196600-40197400	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links