Variant report

Variant	rs35544934
Chromosome Location	chr13:30449046-30449047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12865275	0.85[EUR][1000 genomes]
rs34396373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34693192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34820116	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35546383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35763398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9506237	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30447200-30449400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr13:30447600-30451600	Weak transcription	Stomach Mucosa	stomach
3	chr13:30449000-30450000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:30449000-30450000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:30449000-30450200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:30449000-30450200	Enhancers	Brain Cingulate Gyrus	brain
7	chr13:30449000-30450200	Enhancers	Brain Hippocampus Middle	brain
8	chr13:30449000-30450400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:30449000-30450400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr13:30449000-30450600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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