Variant report

Variant	rs9506237
Chromosome Location	chr13:30464251-30464252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr13:30464145-30464560	HL-60	blood:	n/a	chr13:30464175-30464184
2	SPI1	chr13:30464137-30464577	HL-60	blood:	n/a	chr13:30464175-30464184
3	MYC	chr13:30464242-30464314	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30455592..30458193-chr13:30464245..30465781,2	MCF-7	breast:
2	chr13:30463587..30466025-chr13:30471083..30473651,3	MCF-7	breast:

Variant related genes	Relation type
LINC00297	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10444626	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12865275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34396373	0.85[EUR][1000 genomes]
rs34693192	0.91[EUR][1000 genomes]
rs34820116	0.88[EUR][1000 genomes]
rs35544934	0.85[EUR][1000 genomes]
rs35546383	0.85[EUR][1000 genomes]
rs35763398	0.85[EUR][1000 genomes]
rs7994728	0.85[EUR][1000 genomes]
rs9314987	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9506240	0.85[EUR][1000 genomes]
rs9506241	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9508586	0.85[EUR][1000 genomes]
rs9508587	0.85[EUR][1000 genomes]
rs9508588	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30452200-30468000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:30452200-30468200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:30452600-30472200	Weak transcription	Ovary	ovary
4	chr13:30461200-30466400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:30462000-30468200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:30462400-30466200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr13:30462400-30466200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:30462400-30468200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:30463000-30466200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:30463000-30466400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:30463000-30467600	Weak transcription	Fetal Lung	lung
12	chr13:30463000-30468000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr13:30463000-30476400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr13:30463200-30466400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr13:30463400-30465200	Weak transcription	Brain Substantia Nigra	brain
16	chr13:30463400-30465400	Weak transcription	Brain Hippocampus Middle	brain
17	chr13:30463400-30466000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr13:30463400-30466200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr13:30463400-30466200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr13:30463400-30466400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:30463400-30466400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr13:30463400-30468000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr13:30463600-30466000	Weak transcription	Brain Anterior Caudate	brain
24	chr13:30463600-30466200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr13:30463600-30466400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr13:30463600-30466400	Weak transcription	Brain Angular Gyrus	brain
27	chr13:30463600-30468000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr13:30463800-30466200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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