Variant report

Variant	rs9506241
Chromosome Location	chr13:30479330-30479331
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30421587..30425867-chr13:30475246..30480026,6	MCF-7	breast:
2	chr13:30422727..30425929-chr13:30478315..30480794,4	MCF-7	breast:
3	chr13:30474897..30477785-chr13:30478687..30482625,6	MCF-7	breast:
4	chr13:30475291..30479868-chr13:30496674..30499474,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122042	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10444626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12865275	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7994728	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9314987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9506237	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9506240	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9508586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9508587	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9508588	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30475400-30480600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr13:30476600-30479800	Weak transcription	Fetal Intestine Small	intestine
3	chr13:30476800-30479600	Weak transcription	Fetal Intestine Large	intestine
4	chr13:30476800-30481600	Weak transcription	GM12878-XiMat	blood
5	chr13:30476800-30482000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:30476800-30484000	Weak transcription	Esophagus	oesophagus
7	chr13:30476800-30497600	Weak transcription	Right Atrium	heart
8	chr13:30477000-30479600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr13:30477000-30479600	Weak transcription	Osteobl	bone
10	chr13:30477000-30479800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:30477000-30479800	Weak transcription	Ovary	ovary
12	chr13:30477000-30479800	Weak transcription	HMEC	breast
13	chr13:30477000-30481000	Weak transcription	Stomach Mucosa	stomach
14	chr13:30477000-30482200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr13:30477000-30482400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:30477000-30484800	Weak transcription	A549	lung
17	chr13:30477000-30492400	Weak transcription	Pancreas	Pancrea
18	chr13:30477200-30479600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr13:30477200-30479800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr13:30477200-30479800	Weak transcription	NHEK	skin
21	chr13:30477200-30481000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr13:30477200-30481800	Weak transcription	Fetal Stomach	stomach
23	chr13:30477200-30482000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr13:30477200-30482400	Weak transcription	NHLF	lung
25	chr13:30477200-30484200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr13:30477400-30479600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr13:30477400-30479800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr13:30477400-30479800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr13:30477400-30483400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr13:30477400-30486000	Weak transcription	Adipose Nuclei	Adipose
31	chr13:30477600-30479600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr13:30477600-30479800	Weak transcription	Placenta	Placenta
33	chr13:30477600-30482200	Weak transcription	HSMM	muscle
34	chr13:30477600-30483800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr13:30477600-30484000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr13:30477600-30484200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr13:30478000-30479800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr13:30478000-30481400	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr13:30478600-30479600	Weak transcription	Hela-S3	cervix
40	chr13:30478600-30479800	Weak transcription	Fetal Lung	lung
41	chr13:30478600-30479800	Weak transcription	HSMMtube	muscle
42	chr13:30478600-30481000	Weak transcription	Fetal Muscle Leg	muscle
43	chr13:30478600-30482200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr13:30478600-30482600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr13:30479200-30479800	Weak transcription	Rectal Mucosa Donor 29	rectum

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