Variant report

Variant	rs35553018
Chromosome Location	chr8:59739140-59739141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10099884	0.81[EUR][1000 genomes]
rs13251536	0.81[EUR][1000 genomes]
rs13262120	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924069	0.81[EUR][1000 genomes]
rs16924156	0.81[AMR][1000 genomes]
rs34292465	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34855090	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780000	0.81[EUR][1000 genomes]
rs55914621	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56215946	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56390547	1.00[ASN][1000 genomes]
rs62505095	1.00[ASN][1000 genomes]
rs62505114	1.00[ASN][1000 genomes]
rs72649452	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72649453	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72649459	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72649470	1.00[ASN][1000 genomes]
rs72649486	1.00[ASN][1000 genomes]
rs72651322	1.00[ASN][1000 genomes]
rs72651344	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv972211	chr8:59735634-59742139	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59714600-59746000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:59715000-59742400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:59715200-59757400	Weak transcription	Fetal Intestine Large	intestine
4	chr8:59720600-59754800	Weak transcription	Small Intestine	intestine
5	chr8:59720800-59745200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:59720800-59762600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:59721000-59739200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:59721000-59745000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:59721400-59745000	Weak transcription	Fetal Brain Male	brain
10	chr8:59721600-59745400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:59722400-59757200	Strong transcription	Dnd41	blood
12	chr8:59727000-59745400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:59728400-59741600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr8:59728400-59741600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:59729600-59740000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr8:59729600-59754800	Weak transcription	Gastric	stomach
17	chr8:59730200-59739800	Weak transcription	Fetal Lung	lung
18	chr8:59730800-59770800	Strong transcription	Fetal Thymus	thymus
19	chr8:59732000-59745000	Weak transcription	Fetal Kidney	kidney
20	chr8:59732200-59755200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:59733600-59739200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:59734000-59740000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:59734000-59745200	Weak transcription	Fetal Brain Female	brain
24	chr8:59734200-59739200	Weak transcription	HUVEC	blood vessel
25	chr8:59734200-59739600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:59734800-59740200	Strong transcription	Primary T cells from cord blood	blood
27	chr8:59735000-59739600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr8:59735000-59740200	Strong transcription	Thymus	Thymus
29	chr8:59735200-59739200	Weak transcription	Osteobl	bone
30	chr8:59735200-59739800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:59735600-59740400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr8:59736000-59739400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr8:59736000-59739600	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr8:59736200-59739400	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr8:59736200-59739400	Strong transcription	Duodenum Mucosa	Duodenum
36	chr8:59736400-59739400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr8:59736400-59739400	Strong transcription	Stomach Smooth Muscle	stomach
38	chr8:59736400-59739600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr8:59736600-59739200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr8:59736800-59739800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr8:59737200-59739200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:59737200-59745000	Weak transcription	Fetal Intestine Small	intestine
43	chr8:59737600-59745000	Weak transcription	Brain Germinal Matrix	brain
44	chr8:59737800-59739400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:59737800-59739400	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr8:59738600-59739200	Strong transcription	Fetal Stomach	stomach
47	chr8:59738600-59740200	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr8:59738600-59745400	Enhancers	NHDF-Ad	bronchial
49	chr8:59738800-59739400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:59738800-59740000	Enhancers	Pancreatic Islets	Pancreatic Islet

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