Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12864008	0.86[ASN][1000 genomes]
rs12866736	0.86[ASN][1000 genomes]
rs12868253	0.83[ASN][1000 genomes]
rs17053814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17053823	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17053844	0.87[ASN][1000 genomes]
rs17053849	0.87[ASN][1000 genomes]
rs17053872	0.87[ASN][1000 genomes]
rs1891947	0.87[ASN][1000 genomes]
rs2275840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34110102	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34162017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34298498	0.83[ASN][1000 genomes]
rs34330988	0.82[ASN][1000 genomes]
rs34374288	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34708622	0.89[ASN][1000 genomes]
rs34775431	0.87[AMR][1000 genomes]
rs35121580	0.86[ASN][1000 genomes]
rs35137422	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35226075	0.82[ASN][1000 genomes]
rs35397855	0.87[ASN][1000 genomes]
rs35412628	0.87[AMR][1000 genomes]
rs35472513	0.87[ASN][1000 genomes]
rs35666947	0.82[ASN][1000 genomes]
rs35727089	0.82[ASN][1000 genomes]
rs35756659	0.82[ASN][1000 genomes]
rs36081995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59345770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59513810	0.82[ASN][1000 genomes]
rs61950491	0.86[ASN][1000 genomes]
rs61950492	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53601200-53620000	Weak transcription	Spleen	Spleen
2	chr13:53601400-53617000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:53603200-53619000	Weak transcription	Pancreas	Pancrea
4	chr13:53609000-53626400	Weak transcription	Small Intestine	intestine
5	chr13:53610800-53628800	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr13:53614000-53616000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr13:53614200-53616000	Weak transcription	Fetal Muscle Leg	muscle
8	chr13:53614600-53615000	Enhancers	Adipose Nuclei	Adipose
9	chr13:53614800-53615200	Enhancers	Fetal Brain Female	brain

Quick Search: