Variant report

Variant	rs35562135
Chromosome Location	chr19:40770860-40770861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:40763137..40764665-chr19:40768633..40770903,2	MCF-7	breast:
2	chr19:40768260..40771807-chr19:40783478..40786593,4	K562	blood:
3	chr19:40770481..40772610-chr19:40774016..40777021,3	K562	blood:
4	chr19:40730135..40732831-chr19:40769478..40772203,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105219	Chromatin interaction
ENSG00000105221	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12151335	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12459567	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12460555	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12609014	0.80[ASN][1000 genomes]
rs12977474	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12985477	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1962639	0.87[EUR][1000 genomes]
rs1991460	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2304186	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2368575	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs33933140	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34894858	0.81[ASN][1000 genomes]
rs3745195	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4479364	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4502340	0.81[EUR][1000 genomes]
rs4524046	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4802072	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4803324	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4803325	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4803326	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4803327	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55710016	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57158010	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58502633	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59263025	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67322193	0.81[ASN][1000 genomes]
rs7507651	0.81[EUR][1000 genomes]
rs7508513	0.87[EUR][1000 genomes]
rs8110323	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs890773	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv2758499	chr19:40612420-40839520	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv2758761	chr19:40612420-40839520	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv911699	chr19:40691632-40816530	Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	esv1833489	chr19:40722123-40923908	Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1064502	chr19:40758049-40781360	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1063993	chr19:40763787-40781360	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1059884	chr19:40763839-40781360	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40751200-40771200	Weak transcription	Fetal Heart	heart
2	chr19:40753000-40772000	Weak transcription	Fetal Brain Male	brain
3	chr19:40759800-40775400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr19:40759800-40780600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr19:40762000-40779800	Weak transcription	Stomach Mucosa	stomach
6	chr19:40762200-40772200	Weak transcription	NH-A	brain
7	chr19:40762800-40777600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr19:40762800-40780800	Weak transcription	Small Intestine	intestine
9	chr19:40763200-40774000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr19:40763400-40771000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr19:40763600-40777800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr19:40763800-40777600	Weak transcription	Hela-S3	cervix
13	chr19:40763800-40777600	Weak transcription	HMEC	breast
14	chr19:40765400-40777800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr19:40766200-40788600	Weak transcription	HSMMtube	muscle
16	chr19:40766800-40771400	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr19:40766800-40776600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr19:40767000-40776200	Strong transcription	Primary T cells from cord blood	blood
19	chr19:40767400-40771000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr19:40767400-40771200	Strong transcription	Placenta Amnion	Placenta Amnion
21	chr19:40767400-40774800	Strong transcription	Thymus	Thymus
22	chr19:40767600-40771600	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr19:40767600-40772200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr19:40767600-40774800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr19:40767600-40779600	Strong transcription	Fetal Stomach	stomach
26	chr19:40767800-40771000	Strong transcription	Primary B cells from cord blood	blood
27	chr19:40767800-40771400	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr19:40767800-40771400	Strong transcription	Stomach Smooth Muscle	stomach
29	chr19:40767800-40780400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr19:40768000-40771000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr19:40768000-40771200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr19:40768000-40771200	Strong transcription	Fetal Thymus	thymus
33	chr19:40768000-40771600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr19:40768000-40771600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr19:40768000-40771600	Strong transcription	A549	lung
36	chr19:40768000-40771800	Strong transcription	K562	blood
37	chr19:40768000-40772400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr19:40768000-40772400	Strong transcription	Placenta	Placenta
39	chr19:40768000-40774400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr19:40768200-40771000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr19:40768200-40771000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr19:40768200-40771200	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr19:40768200-40771200	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr19:40768200-40771200	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr19:40768200-40771200	Strong transcription	Liver	Liver
46	chr19:40768200-40771200	Strong transcription	Pancreas	Pancrea
47	chr19:40768200-40771200	Strong transcription	Rectal Smooth Muscle	rectum
48	chr19:40768200-40771200	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr19:40768200-40771400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr19:40768200-40771400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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