Variant report

Variant	rs35573057
Chromosome Location	chr13:96705464-96705465
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:96705350..96706193-chr15:72520336..72521147,2	Hela-S3	cervix:
2	chr13:96705422..96706004-chr16:74337665..74338558,2	NB4	blood:
3	chr13:96705368..96706022-chr3:169482389..169482964,2	Hela-S3	cervix:
4	chr13:96705303..96706107-chr17:73775369..73775878,2	Hela-S3	cervix:
5	chr1:16970980..16971545-chr13:96704941..96705920,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000270141	Chromatin interaction
ENSG00000067225	Chromatin interaction
ENSG00000132475	Chromatin interaction
ENSG00000103035	Chromatin interaction
ENSG00000215908	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1051574	chr13:96550653-96779248	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1040320	chr13:96573646-96790859	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
8	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv3390792	chr13:96705451-96707499	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96703800-96706200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:96704000-96706400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:96704200-96706200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:96704200-96706200	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr13:96704200-96707000	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr13:96704400-96706200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:96704400-96706200	Active TSS	Fetal Kidney	kidney
8	chr13:96704400-96706200	Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr13:96704400-96707200	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr13:96704600-96706000	Active TSS	HepG2	liver
11	chr13:96704600-96706200	Active TSS	H1 Cell Line	embryonic stem cell
12	chr13:96704600-96706200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr13:96704600-96706200	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr13:96704600-96706200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:96704600-96706200	Active TSS	Brain Hippocampus Middle	brain
16	chr13:96704600-96706200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr13:96704600-96706200	Active TSS	Psoas Muscle	Psoas
18	chr13:96704600-96706200	Active TSS	Rectal Smooth Muscle	rectum
19	chr13:96704600-96706200	Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr13:96704600-96706200	Active TSS	A549	lung
21	chr13:96704600-96706200	Active TSS	K562	blood
22	chr13:96704600-96706200	Active TSS	NHDF-Ad	bronchial
23	chr13:96704600-96706400	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr13:96704600-96706400	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr13:96704600-96706400	Active TSS	Rectal Mucosa Donor 31	rectum
26	chr13:96704600-96706600	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr13:96704600-96706600	Active TSS	HMEC	breast
28	chr13:96704600-96706600	Active TSS	NHEK	skin
29	chr13:96704600-96706800	Active TSS	H9 Cell Line	embryonic stem cell
30	chr13:96704800-96706000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr13:96704800-96706000	Active TSS	Fetal Heart	heart
32	chr13:96704800-96706000	Active TSS	Fetal Muscle Trunk	muscle
33	chr13:96704800-96706200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr13:96704800-96706200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr13:96704800-96706200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr13:96704800-96706200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr13:96704800-96706200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr13:96704800-96706200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr13:96704800-96706200	Active TSS	Aorta	Aorta
40	chr13:96704800-96706200	Active TSS	Brain Substantia Nigra	brain
41	chr13:96704800-96706200	Active TSS	Duodenum Mucosa	Duodenum
42	chr13:96704800-96706200	Active TSS	Fetal Brain Male	brain
43	chr13:96704800-96706200	Active TSS	Fetal Lung	lung
44	chr13:96704800-96706200	Active TSS	Fetal Stomach	stomach
45	chr13:96704800-96706200	Active TSS	Ovary	ovary
46	chr13:96704800-96706200	Active TSS	Right Atrium	heart
47	chr13:96704800-96706200	Active TSS	Right Ventricle	heart
48	chr13:96704800-96706200	Bivalent/Poised TSS	Thymus	Thymus
49	chr13:96704800-96706200	Active TSS	HSMM	muscle
50	chr13:96704800-96706400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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