Variant report

Variant	rs35588458
Chromosome Location	chr5:179677778-179677779
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:179647507..179649585-chr5:179676137..179678589,2	K562	blood:
2	chr5:179672853..179674649-chr5:179677666..179679886,2	MCF-7	breast:
3	chr5:179668812..179671072-chr5:179675335..179678649,3	MCF-7	breast:
4	chr5:179670436..179673688-chr5:179675507..179679295,5	K562	blood:

Variant related genes	Relation type
ENSG00000050748	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11956696	0.95[EUR][1000 genomes]
rs17683933	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33979712	0.95[EUR][1000 genomes]
rs35254089	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35624369	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35691219	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36010045	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4601008	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4639174	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56264608	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56320879	0.90[EUR][1000 genomes]
rs6898670	0.95[EUR][1000 genomes]
rs6898872	0.95[EUR][1000 genomes]
rs73338764	0.84[EUR][1000 genomes]
rs73811321	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73811322	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73811323	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948909	chr5:179249099-179772640	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv1033706	chr5:179402769-179806356	Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv2758032	chr5:179534477-179729944	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv2759398	chr5:179534477-179729944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1023914	chr5:179649883-180040672	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv537983	chr5:179649883-180040672	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179651600-179678000	Weak transcription	Fetal Heart	heart
2	chr5:179653600-179714600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:179655000-179679600	Weak transcription	Stomach Mucosa	stomach
4	chr5:179655400-179712600	ZNF genes & repeats	Liver	Liver
5	chr5:179656600-179703000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
6	chr5:179657800-179697000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:179658400-179679200	Strong transcription	Primary T cells from cord blood	blood
8	chr5:179658800-179680400	Weak transcription	Fetal Kidney	kidney
9	chr5:179660200-179679800	Weak transcription	HUVEC	blood vessel
10	chr5:179660800-179706800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:179665800-179696600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:179666000-179697000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr5:179668000-179678400	Weak transcription	Brain Substantia Nigra	brain
14	chr5:179668200-179696800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
15	chr5:179669400-179683600	Weak transcription	K562	blood
16	chr5:179669800-179678200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
17	chr5:179670200-179681600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:179670200-179712800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:179671200-179694000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
20	chr5:179673600-179677800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:179673600-179678400	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr5:179673600-179691400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:179673600-179694800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr5:179673600-179695200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
25	chr5:179673600-179696600	ZNF genes & repeats	Adipose Nuclei	Adipose
26	chr5:179673600-179697000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:179673600-179697000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
28	chr5:179673600-179701800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
29	chr5:179673600-179705400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:179673800-179696400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:179674000-179678400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr5:179674200-179677800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
33	chr5:179674200-179677800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
34	chr5:179674200-179677800	ZNF genes & repeats	Pancreas	Pancrea
35	chr5:179674200-179677800	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr5:179674200-179678400	Strong transcription	Fetal Muscle Leg	muscle
37	chr5:179674200-179679800	ZNF genes & repeats	GM12878-XiMat	blood
38	chr5:179674200-179680800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:179674200-179680800	ZNF genes & repeats	Aorta	Aorta
40	chr5:179674200-179680800	ZNF genes & repeats	Esophagus	oesophagus
41	chr5:179674200-179680800	ZNF genes & repeats	Gastric	stomach
42	chr5:179674200-179684800	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr5:179674200-179685000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr5:179674200-179685000	ZNF genes & repeats	Colonic Mucosa	Colon
45	chr5:179674200-179685000	ZNF genes & repeats	Lung	lung
46	chr5:179674200-179685000	ZNF genes & repeats	Spleen	Spleen
47	chr5:179674200-179685200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr5:179674200-179686000	ZNF genes & repeats	Fetal Intestine Large	intestine
49	chr5:179674200-179686200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
50	chr5:179674200-179687000	ZNF genes & repeats	Left Ventricle	heart

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