Variant report

Variant	rs73811323
Chromosome Location	chr5:179659585-179659586
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11956696	0.95[EUR][1000 genomes]
rs17683933	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33979712	0.95[EUR][1000 genomes]
rs35254089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35588458	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35624369	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35691219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36010045	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4601008	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4639174	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56264608	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56320879	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6898670	0.95[EUR][1000 genomes]
rs6898872	0.95[EUR][1000 genomes]
rs73338764	0.84[EUR][1000 genomes]
rs73811321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73811322	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948909	chr5:179249099-179772640	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv1033706	chr5:179402769-179806356	Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv2758032	chr5:179534477-179729944	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv2759398	chr5:179534477-179729944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1023914	chr5:179649883-180040672	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv537983	chr5:179649883-180040672	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179645600-179660200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:179647600-179659800	Weak transcription	Brain Angular Gyrus	brain
3	chr5:179647600-179660200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr5:179649600-179660200	Weak transcription	Fetal Brain Female	brain
5	chr5:179650200-179669000	Weak transcription	Fetal Brain Male	brain
6	chr5:179651600-179678000	Weak transcription	Fetal Heart	heart
7	chr5:179652000-179660000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:179652400-179660200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:179653000-179662800	Weak transcription	Brain Hippocampus Middle	brain
10	chr5:179653200-179660000	Weak transcription	Fetal Lung	lung
11	chr5:179653600-179662400	Weak transcription	Brain Substantia Nigra	brain
12	chr5:179653600-179714600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:179653800-179662000	Weak transcription	Fetal Thymus	thymus
14	chr5:179654000-179660200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:179654000-179661800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:179654200-179660400	Weak transcription	Fetal Intestine Small	intestine
17	chr5:179654400-179660800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr5:179654800-179660800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:179655000-179679600	Weak transcription	Stomach Mucosa	stomach
20	chr5:179655200-179663200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr5:179655400-179660600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:179655400-179712600	ZNF genes & repeats	Liver	Liver
23	chr5:179655800-179661600	ZNF genes & repeats	Lung	lung
24	chr5:179655800-179666400	ZNF genes & repeats	Aorta	Aorta
25	chr5:179655800-179675400	Strong transcription	Primary B cells from cord blood	blood
26	chr5:179656200-179660200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:179656200-179675000	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr5:179656600-179660200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr5:179656600-179703000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr5:179656800-179659600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr5:179656800-179660200	Weak transcription	Fetal Intestine Large	intestine
32	chr5:179656800-179660800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr5:179656800-179666000	Weak transcription	NH-A	brain
34	chr5:179657000-179660200	Weak transcription	Brain Anterior Caudate	brain
35	chr5:179657200-179660200	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr5:179657200-179660600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr5:179657200-179660800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr5:179657200-179668000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:179657400-179660200	Weak transcription	Hela-S3	cervix
40	chr5:179657400-179660800	Weak transcription	Right Ventricle	heart
41	chr5:179657400-179661200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr5:179657400-179661200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr5:179657400-179662000	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr5:179657400-179663000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr5:179657400-179669200	Strong transcription	Fetal Stomach	stomach
46	chr5:179657400-179669200	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr5:179657400-179673600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr5:179657400-179674400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr5:179657600-179660400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr5:179657600-179667800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links