Variant report
Variant | rs35600904 |
---|---|
Chromosome Location | chr7:49971658-49971659 |
allele | -/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11185592 | 0.82[AMR][1000 genomes] |
rs11185593 | 0.82[AMR][1000 genomes] |
rs11978548 | 0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs13245999 | 0.82[AMR][1000 genomes] |
rs1384637 | 0.82[AMR][1000 genomes] |
rs1483072 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes] |
rs1483074 | 0.83[AMR][1000 genomes] |
rs1483084 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1483094 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1564740 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes] |
rs1567269 | 0.82[AMR][1000 genomes] |
rs1872137 | 0.94[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs1911765 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1983159 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1983161 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1983162 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs2046300 | 0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs2086696 | 0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs2170787 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes] |
rs2365784 | 0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs2886462 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs3850669 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs4451253 | 0.84[AMR][1000 genomes] |
rs4916997 | 0.83[AMR][1000 genomes] |
rs4916998 | 0.82[AMR][1000 genomes] |
rs528279 | 0.84[EUR][1000 genomes] |
rs539930 | 0.83[AMR][1000 genomes] |
rs544853 | 0.84[EUR][1000 genomes] |
rs55947532 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes] |
rs598871 | 0.81[AMR][1000 genomes] |
rs623107 | 0.83[AMR][1000 genomes] |
rs629285 | 0.84[EUR][1000 genomes] |
rs6583396 | 0.84[AMR][1000 genomes] |
rs6583397 | 0.84[AMR][1000 genomes] |
rs690842 | 0.81[AMR][1000 genomes] |
rs691458 | 0.81[AMR][1000 genomes] |
rs692201 | 0.83[AMR][1000 genomes] |
rs6957719 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes] |
rs6966640 | 0.83[AMR][1000 genomes] |
rs726383 | 0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs7779095 | 0.94[AFR][1000 genomes];0.86[AMR][1000 genomes] |
rs7788609 | 0.85[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs985489 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv464444 | chr7:49671882-50454736 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
2 | nsv606897 | chr7:49671883-50454736 | Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
3 | nsv498090 | chr7:49708644-50427714 | Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
4 | nsv1020869 | chr7:49712860-50457544 | Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
5 | nsv830997 | chr7:49970866-50136498 | Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:49968800-49972600 | Weak transcription | Fetal Heart | heart |
2 | chr7:49971400-49972600 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |