Variant report

Variant	rs7788609
Chromosome Location	chr7:49951335-49951336
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11185592	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11185593	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11978548	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12532827	0.83[EUR][1000 genomes]
rs12718225	0.83[EUR][1000 genomes]
rs13245999	0.85[EUR][1000 genomes]
rs1351694	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1384635	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1384636	0.89[EUR][1000 genomes]
rs1384637	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1483072	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1483074	0.91[EUR][1000 genomes]
rs1483084	0.80[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1483094	1.00[EUR][1000 genomes]
rs1564740	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1567269	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1872137	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1911765	0.98[EUR][1000 genomes]
rs1983159	1.00[EUR][1000 genomes]
rs1983162	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2046300	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2086696	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2170787	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2365784	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2886462	1.00[EUR][1000 genomes]
rs35600904	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3850669	1.00[EUR][1000 genomes]
rs4451253	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4916995	0.81[EUR][1000 genomes]
rs4916997	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4916998	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4917094	0.81[EUR][1000 genomes]
rs495813	0.80[EUR][1000 genomes]
rs521484	0.80[AMR][1000 genomes]
rs528279	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539930	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs544853	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947532	0.84[EUR][1000 genomes]
rs598871	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs623107	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs629285	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583394	0.83[EUR][1000 genomes]
rs6583395	0.83[EUR][1000 genomes]
rs6583396	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6583397	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs690842	0.81[EUR][1000 genomes]
rs691194	0.83[EUR][1000 genomes]
rs691413	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs691458	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs691636	0.87[EUR][1000 genomes]
rs692039	0.83[EUR][1000 genomes]
rs692201	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs692667	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6952121	0.85[EUR][1000 genomes]
rs6953702	0.81[EUR][1000 genomes]
rs6957719	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6963083	0.83[EUR][1000 genomes]
rs6966640	0.89[EUR][1000 genomes]
rs6977361	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs726383	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7779095	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7797267	0.89[EUR][1000 genomes]
rs7802037	0.81[EUR][1000 genomes]
rs7809987	0.89[EUR][1000 genomes]
rs985489	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:49950800-49952800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:49951200-49952200	Enhancers	Fetal Brain Male	brain

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