Variant report

Variant	rs6583394
Chromosome Location	chr7:49904031-49904032
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs1021139	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10229515	0.94[CEU][hapmap];0.88[CHB][hapmap]
rs10233698	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10251249	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11185592	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11185593	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11185597	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11185598	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11970999	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11978548	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12532827	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540153	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12672757	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12691361	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12718225	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222252	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13245999	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13310601	0.81[AMR][1000 genomes]
rs1351688	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1351691	1.00[CHB][hapmap]
rs1351694	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1355037	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1384635	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1384636	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1384637	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1396277	0.94[CEU][hapmap];0.88[CHB][hapmap]
rs1476240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1476241	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483071	0.90[ASN][1000 genomes]
rs1483072	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1483074	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1483076	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483077	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483083	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483084	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1483086	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483087	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483088	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483089	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483090	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483091	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483094	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1564740	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1567269	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1601032	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1601035	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1601037	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1872137	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1905271	0.88[CHB][hapmap]
rs1905272	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1911765	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1911767	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1983159	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1983162	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2046299	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2046300	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2086696	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2128658	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2128664	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2170787	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2365784	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2365791	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2366023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2886462	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2886464	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3850669	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4451253	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4916995	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4916997	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4916998	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4917005	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4917094	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4917095	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4917103	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs495813	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs528279	0.84[EUR][1000 genomes]
rs539930	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs544853	0.84[EUR][1000 genomes]
rs55947532	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs598871	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs623107	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs629285	0.84[EUR][1000 genomes]
rs6583395	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6583396	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6583397	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6583407	0.88[CHB][hapmap]
rs690842	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs691194	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs691413	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs691458	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs691636	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs692039	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs692201	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs692667	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6948934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6952121	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953525	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6953702	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957719	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6963083	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6966640	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6977361	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6979166	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs726383	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs769922	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs769927	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7779095	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7785151	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7788033	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7788589	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7788609	0.83[EUR][1000 genomes]
rs7788998	0.85[CHB][hapmap]
rs7792222	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7793883	0.94[CEU][hapmap];0.88[CHB][hapmap]
rs7797267	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7802037	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7805203	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7809987	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs959678	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs985489	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs988393	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:49904000-49904400	Enhancers	Left Ventricle	heart
2	chr7:49904000-49906000	Enhancers	Right Atrium	heart
3	chr7:49904000-49906600	Enhancers	Ovary	ovary

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