Variant report

Variant	rs35611355
Chromosome Location	chr9:18255609-18255610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:18254620..18255832-chr9:18825877..18827696,5	MCF-7	breast:
2	chr9:18255104..18255666-chr9:18823787..18824360,2	MCF-7	breast:
3	chr9:18255224..18255738-chr9:19028566..19029077,2	K562	blood:
4	chr9:18254776..18255758-chr9:18790832..18791755,3	MCF-7	breast:
5	chr9:18254973..18255762-chr9:19028514..19029097,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178031	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13298867	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16936473	0.91[EUR][1000 genomes]
rs34027350	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34509703	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18225800-18260600	Weak transcription	Aorta	Aorta
2	chr9:18250600-18255800	Weak transcription	NH-A	brain
3	chr9:18255200-18256000	Enhancers	Fetal Stomach	stomach
4	chr9:18255200-18256400	Enhancers	Fetal Kidney	kidney
5	chr9:18255200-18256600	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr9:18255200-18260400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:18255400-18256000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:18255400-18256000	Enhancers	HUVEC	blood vessel
9	chr9:18255400-18256200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:18255400-18256200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr9:18255400-18256600	Enhancers	Colon Smooth Muscle	Colon
12	chr9:18255400-18256600	Enhancers	NHLF	lung
13	chr9:18255400-18256800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:18255400-18256800	Enhancers	Fetal Heart	heart
15	chr9:18255400-18256800	Enhancers	Osteobl	bone
16	chr9:18255400-18257000	Enhancers	NHDF-Ad	bronchial
17	chr9:18255600-18256000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:18255600-18256000	Enhancers	Fetal Thymus	thymus
19	chr9:18255600-18256800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:18255600-18257000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:18255600-18260000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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