Variant report

Variant	rs35622327
Chromosome Location	chr5:5257139-5257140
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10053990	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13178178	0.81[EUR][1000 genomes]
rs2913639	0.83[ASN][1000 genomes]
rs2913641	0.87[ASN][1000 genomes]
rs2913642	0.87[ASN][1000 genomes]
rs2913643	0.87[ASN][1000 genomes]
rs2913644	0.87[ASN][1000 genomes]
rs2913645	1.00[ASN][1000 genomes]
rs2913647	0.87[ASN][1000 genomes]
rs2913648	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2913649	0.87[ASN][1000 genomes]
rs2913651	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2964403	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2964404	0.97[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2964405	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2964406	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2964407	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2964408	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2964409	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2964410	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2964411	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2964412	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2964413	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2964415	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2964419	0.87[ASN][1000 genomes]
rs2964420	0.87[ASN][1000 genomes]
rs35371984	0.81[EUR][1000 genomes]
rs35648750	0.81[EUR][1000 genomes]
rs66543945	0.81[EUR][1000 genomes]
rs68048667	0.81[EUR][1000 genomes]
rs71596746	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71596747	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5185200-5262800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:5239400-5263000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:5240800-5263000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:5244600-5266400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:5254200-5262800	Weak transcription	Pancreas	Pancrea
6	chr5:5254400-5271200	Weak transcription	Fetal Kidney	kidney
7	chr5:5255800-5259400	Strong transcription	Ovary	ovary
8	chr5:5255800-5262800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:5256000-5262800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:5256000-5262800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:5256400-5271600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:5256600-5257600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:5256600-5262800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:5257000-5265000	Weak transcription	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links