Variant report

Variant	rs2913649
Chromosome Location	chr5:5256818-5256819
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10053990	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10055135	1.00[AMR][1000 genomes]
rs10475297	1.00[AMR][1000 genomes]
rs12332322	1.00[AMR][1000 genomes]
rs16875470	1.00[AMR][1000 genomes]
rs16875471	1.00[AMR][1000 genomes]
rs16875487	1.00[AMR][1000 genomes]
rs28477949	1.00[AMR][1000 genomes]
rs28535497	1.00[AMR][1000 genomes]
rs28537743	1.00[AMR][1000 genomes]
rs28647861	1.00[AMR][1000 genomes]
rs2913639	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2913641	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913642	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913643	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913644	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2913647	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913648	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2913651	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2913652	0.82[YRI][hapmap]
rs2964403	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964404	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2964405	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964406	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964407	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964408	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964409	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964410	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964411	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964412	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964413	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964415	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964419	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964420	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35622327	0.87[ASN][1000 genomes]
rs71596746	0.83[ASN][1000 genomes]
rs9313110	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5185200-5262800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:5239400-5263000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:5240800-5263000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:5244600-5266400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:5254200-5262800	Weak transcription	Pancreas	Pancrea
6	chr5:5254400-5271200	Weak transcription	Fetal Kidney	kidney
7	chr5:5255600-5257000	ZNF genes & repeats	NH-A	brain
8	chr5:5255800-5259400	Strong transcription	Ovary	ovary
9	chr5:5255800-5262800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:5256000-5262800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:5256000-5262800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:5256400-5271600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:5256600-5257600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:5256600-5262800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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