Variant report

Variant	rs12332322
Chromosome Location	chr5:5353014-5353015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10055135	1.00[AMR][1000 genomes]
rs10475297	1.00[AMR][1000 genomes]
rs16875470	1.00[AMR][1000 genomes]
rs16875471	1.00[AMR][1000 genomes]
rs16875487	1.00[AMR][1000 genomes]
rs28477949	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28535497	1.00[AMR][1000 genomes]
rs28537743	1.00[AMR][1000 genomes]
rs28647861	1.00[AMR][1000 genomes]
rs2913649	1.00[AMR][1000 genomes]
rs2964420	1.00[AMR][1000 genomes]
rs66706717	1.00[ASN][1000 genomes]
rs9313110	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5345000-5354800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:5345200-5355600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:5348600-5353800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:5351000-5353200	Enhancers	HepG2	liver
5	chr5:5351600-5353200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:5352000-5356800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:5352200-5354000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:5352200-5354000	Weak transcription	HSMM	muscle
9	chr5:5352600-5362200	Weak transcription	Hela-S3	cervix
10	chr5:5352800-5353200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:5352800-5353200	Transcr. at gene 5' and 3'	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:5352800-5353200	ZNF genes & repeats	Fetal Kidney	kidney
13	chr5:5353000-5353200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:5353000-5353200	Enhancers	K562	blood
15	chr5:5353000-5358200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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