Variant report

Variant	rs10055135
Chromosome Location	chr5:5382385-5382386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10475297	1.00[AMR][1000 genomes]
rs12332322	1.00[AMR][1000 genomes]
rs16875470	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16875471	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16875487	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28477949	1.00[AMR][1000 genomes]
rs28535497	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28537743	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28647861	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2913649	1.00[AMR][1000 genomes]
rs2964420	1.00[AMR][1000 genomes]
rs9313110	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5370600-5383000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:5376200-5383600	Weak transcription	Spleen	Spleen
3	chr5:5378400-5382400	Enhancers	Fetal Brain Male	brain
4	chr5:5378600-5382800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:5379000-5384400	Weak transcription	Adipose Nuclei	Adipose
6	chr5:5380400-5382600	Enhancers	Fetal Brain Female	brain
7	chr5:5380400-5382600	Enhancers	Fetal Muscle Leg	muscle
8	chr5:5381000-5382600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:5381000-5383600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:5381000-5384400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr5:5381000-5394400	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:5381600-5382400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:5381800-5382600	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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