Variant report

Variant	rs10475297
Chromosome Location	chr5:5391099-5391100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10055135	1.00[AMR][1000 genomes]
rs12332322	1.00[AMR][1000 genomes]
rs16875470	1.00[AMR][1000 genomes]
rs16875471	1.00[AMR][1000 genomes]
rs16875487	1.00[AMR][1000 genomes]
rs28477949	1.00[AMR][1000 genomes]
rs28535497	1.00[AMR][1000 genomes]
rs28537743	1.00[AMR][1000 genomes]
rs28647861	1.00[AMR][1000 genomes]
rs2913649	1.00[AMR][1000 genomes]
rs2964420	1.00[AMR][1000 genomes]
rs9313110	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv968869	chr5:5390492-5394978	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5381000-5394400	Weak transcription	Brain Hippocampus Middle	brain
2	chr5:5389200-5399400	Weak transcription	Aorta	Aorta
3	chr5:5390200-5391800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:5390800-5391200	Enhancers	Placenta	Placenta
5	chr5:5390800-5391400	Weak transcription	Adipose Nuclei	Adipose
6	chr5:5391000-5391600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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