Variant report

Variant	rs35624553
Chromosome Location	chr3:45867440-45867441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:45863759..45865356-chr3:45865550..45869231,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10490770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13071258	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13078854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13081482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13092887	0.83[AMR][1000 genomes]
rs17712877	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17713054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17763537	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17763569	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17763742	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34288077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34326463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34668658	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35044562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35081325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35508621	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35652899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35731912	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35896106	0.84[EUR][1000 genomes]
rs67959919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71325088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72893671	0.92[EUR][1000 genomes]
rs73064425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73064431	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv3796	chr3:45850961-45886045	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45847800-45871400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:45849400-45875200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:45849800-45871800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:45850200-45867800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:45850600-45868200	Weak transcription	Spleen	Spleen
6	chr3:45857800-45871600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:45858000-45882600	Weak transcription	A549	lung
8	chr3:45858400-45868400	Weak transcription	Fetal Kidney	kidney
9	chr3:45858400-45881200	Strong transcription	Dnd41	blood
10	chr3:45859400-45868400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:45859800-45871400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:45860000-45880000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:45860000-45882400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:45860200-45867600	Weak transcription	GM12878-XiMat	blood
15	chr3:45860400-45867800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:45860400-45868000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:45860400-45868200	Strong transcription	Fetal Thymus	thymus
18	chr3:45860400-45868200	Weak transcription	Pancreas	Pancrea
19	chr3:45860400-45871600	Weak transcription	Esophagus	oesophagus
20	chr3:45860400-45871800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:45860400-45871800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:45860400-45875800	Weak transcription	Placenta	Placenta
23	chr3:45860400-45877400	Strong transcription	Liver	Liver
24	chr3:45860600-45874400	Weak transcription	HUVEC	blood vessel
25	chr3:45860800-45868400	Weak transcription	Gastric	stomach
26	chr3:45860800-45875200	Weak transcription	Aorta	Aorta
27	chr3:45861000-45882400	Weak transcription	Small Intestine	intestine
28	chr3:45861000-45882400	Weak transcription	NHDF-Ad	bronchial
29	chr3:45861000-45882600	Weak transcription	Stomach Mucosa	stomach
30	chr3:45861000-45882600	Weak transcription	Hela-S3	cervix
31	chr3:45861200-45868200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:45861200-45879600	Strong transcription	Stomach Smooth Muscle	stomach
33	chr3:45861200-45882400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr3:45861200-45882600	Weak transcription	Right Ventricle	heart
35	chr3:45861400-45867800	Weak transcription	NHEK	skin
36	chr3:45861400-45868200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:45861400-45868200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:45861400-45882200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr3:45861400-45882200	Weak transcription	Fetal Heart	heart
40	chr3:45861600-45869800	Weak transcription	HMEC	breast
41	chr3:45861800-45868000	Weak transcription	HSMMtube	muscle
42	chr3:45861800-45882600	Weak transcription	NHLF	lung
43	chr3:45862000-45882800	Weak transcription	Psoas Muscle	Psoas
44	chr3:45862200-45870000	Strong transcription	Brain Hippocampus Middle	brain
45	chr3:45862200-45871800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:45862200-45879400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr3:45862200-45882600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr3:45862400-45879800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:45862400-45880000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:45862600-45877400	Strong transcription	Adipose Nuclei	Adipose

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