Variant report

Variant	rs73064431
Chromosome Location	chr3:45909528-45909529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:45908244..45910273-chr3:45911912..45913834,2	K562	blood:
2	chr3:45900221..45902681-chr3:45909475..45912786,3	K562	blood:
3	chr3:45908212..45911820-chr3:45911912..45916177,5	K562	blood:
4	chr3:45908082..45910332-chr3:45917693..45919540,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10490770	0.80[EUR][1000 genomes]
rs13078854	0.80[EUR][1000 genomes]
rs13081482	0.86[EUR][1000 genomes]
rs13092887	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17712877	0.80[EUR][1000 genomes]
rs17713054	0.80[EUR][1000 genomes]
rs17763742	0.80[EUR][1000 genomes]
rs34288077	0.85[EUR][1000 genomes]
rs34668658	0.80[EUR][1000 genomes]
rs35044562	0.86[EUR][1000 genomes]
rs35081325	0.85[EUR][1000 genomes]
rs35508621	0.83[EUR][1000 genomes]
rs35624553	0.80[EUR][1000 genomes]
rs35652899	0.86[EUR][1000 genomes]
rs35731912	0.85[EUR][1000 genomes]
rs67959919	0.83[EUR][1000 genomes]
rs71325088	0.80[EUR][1000 genomes]
rs73064425	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45902600-45910200	Weak transcription	Gastric	stomach
2	chr3:45905400-45911000	Weak transcription	Esophagus	oesophagus
3	chr3:45906800-45912600	Enhancers	Fetal Thymus	thymus
4	chr3:45907000-45909800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr3:45907000-45911200	Enhancers	Thymus	Thymus
6	chr3:45907200-45910400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:45907400-45910200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:45907400-45910200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr3:45907400-45910400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:45907400-45910400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr3:45907600-45909800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:45907600-45910200	Enhancers	GM12878-XiMat	blood
13	chr3:45907600-45910600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr3:45907800-45909800	Weak transcription	Primary T cells from cord blood	blood
15	chr3:45907800-45910000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr3:45908800-45913000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr3:45909000-45910200	Genic enhancers	Dnd41	blood
18	chr3:45909000-45912800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:45909200-45913400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:45909400-45912400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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