Variant report
Variant | rs35662507 |
---|---|
Chromosome Location | chr2:210067442-210067443 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10181524 | 1.00[EUR][1000 genomes] |
rs10188154 | 1.00[EUR][1000 genomes] |
rs10192007 | 1.00[EUR][1000 genomes] |
rs10202928 | 1.00[EUR][1000 genomes] |
rs12694155 | 1.00[EUR][1000 genomes] |
rs12986446 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12991611 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12995006 | 1.00[EUR][1000 genomes] |
rs12995332 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12999884 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13003135 | 1.00[EUR][1000 genomes] |
rs13006419 | 0.86[EUR][1000 genomes] |
rs13017472 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1374338 | 0.86[EUR][1000 genomes] |
rs1374339 | 0.86[EUR][1000 genomes] |
rs1992772 | 0.86[EUR][1000 genomes] |
rs34565674 | 0.83[AMR][1000 genomes] |
rs34719629 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35191402 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35203732 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs35289769 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35358788 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs35382863 | 0.86[EUR][1000 genomes] |
rs35634353 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35645004 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35791583 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35955770 | 0.83[AMR][1000 genomes] |
rs36035019 | 0.86[EUR][1000 genomes] |
rs61332285 | 0.83[AMR][1000 genomes] |
rs66807492 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs67654534 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs72996582 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs72996593 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs73000407 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73000497 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv875761 | chr2:209912108-210222004 | Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv1000214 | chr2:209987607-210308626 | Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
3 | nsv536133 | chr2:209987607-210308626 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv460059 | chr2:210058383-210215272 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv584308 | chr2:210058383-210215272 | Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv1006506 | chr2:210063871-210212039 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv536134 | chr2:210063871-210212039 | Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
8 | nsv1003864 | chr2:210063871-210308626 | Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:210066000-210072400 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
2 | chr2:210066000-210073000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
3 | chr2:210067200-210068200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
4 | chr2:210067400-210071800 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |