Variant report
Variant | rs66807492 |
---|---|
Chromosome Location | chr2:210061507-210061508 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10181524 | 0.82[EUR][1000 genomes] |
rs10188154 | 0.82[EUR][1000 genomes] |
rs10192007 | 0.82[EUR][1000 genomes] |
rs10202928 | 0.82[EUR][1000 genomes] |
rs12694155 | 0.82[EUR][1000 genomes] |
rs12986446 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs12991611 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs12995006 | 0.82[EUR][1000 genomes] |
rs12995332 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs12999884 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs13003135 | 0.82[EUR][1000 genomes] |
rs13017472 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs34719629 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs35191402 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs35203732 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs35289769 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs35358788 | 0.83[AMR][1000 genomes] |
rs35634353 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs35645004 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs35662507 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs35791583 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs35955770 | 0.83[AMR][1000 genomes] |
rs61332285 | 0.83[AMR][1000 genomes] |
rs67654534 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs72996582 | 1.00[AMR][1000 genomes] |
rs72996593 | 1.00[AMR][1000 genomes] |
rs73000407 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs73000497 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv875761 | chr2:209912108-210222004 | Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv1000214 | chr2:209987607-210308626 | Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
3 | nsv536133 | chr2:209987607-210308626 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv460059 | chr2:210058383-210215272 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv584308 | chr2:210058383-210215272 | Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:210056600-210065200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |