Variant report

Variant	rs35663652
Chromosome Location	chr3:68054213-68054214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10865595	1.00[EUR][1000 genomes]
rs11127768	1.00[EUR][1000 genomes]
rs11127769	1.00[EUR][1000 genomes]
rs11916311	1.00[EUR][1000 genomes]
rs13084165	1.00[EUR][1000 genomes]
rs35567425	1.00[EUR][1000 genomes]
rs4298057	1.00[EUR][1000 genomes]
rs4373077	1.00[EUR][1000 genomes]
rs4508799	1.00[EUR][1000 genomes]
rs4568146	1.00[EUR][1000 genomes]
rs4596161	1.00[EUR][1000 genomes]
rs4596162	1.00[EUR][1000 genomes]
rs7427797	1.00[EUR][1000 genomes]
rs7611791	1.00[EUR][1000 genomes]
rs7645809	1.00[EUR][1000 genomes]
rs7653632	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1010231	chr3:67894825-68117879	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1013531	chr3:67917771-68070027	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3442201	chr3:67925312-68064610	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3338669	chr3:67925912-68064160	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3395568	chr3:67955462-68064660	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv876924	chr3:67978367-68063259	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68052800-68055400	Active TSS	Fetal Brain Female	brain
2	chr3:68053000-68055800	Active TSS	Fetal Brain Male	brain
3	chr3:68053000-68056200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:68053200-68054600	Active TSS	Brain Angular Gyrus	brain
5	chr3:68053200-68054800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
6	chr3:68053200-68057600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:68053400-68054600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:68053400-68055000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:68053400-68055000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:68053400-68055600	Active TSS	Brain Hippocampus Middle	brain
11	chr3:68053600-68054400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:68053600-68055000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:68053600-68055600	Weak transcription	Aorta	Aorta
14	chr3:68053600-68056600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:68053600-68058000	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr3:68053800-68054400	Enhancers	Brain Germinal Matrix	brain
17	chr3:68054200-68054400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr3:68054200-68054800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
19	chr3:68054200-68055000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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