Variant report
| Variant | rs11916311 |
|---|---|
| Chromosome Location | chr3:67890089-67890090 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FAM19A1-1 | chr3:67889921-67891263 | NONHSAT090326 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1037821 | 1.00[AMR][1000 genomes] |
| rs10865595 | 1.00[EUR][1000 genomes] |
| rs11127768 | 1.00[EUR][1000 genomes] |
| rs11127769 | 1.00[EUR][1000 genomes] |
| rs13084165 | 1.00[EUR][1000 genomes] |
| rs1459907 | 1.00[AMR][1000 genomes] |
| rs1459910 | 1.00[AMR][1000 genomes] |
| rs1459911 | 1.00[AMR][1000 genomes] |
| rs1903238 | 1.00[AMR][1000 genomes] |
| rs35567425 | 1.00[EUR][1000 genomes] |
| rs35663652 | 1.00[EUR][1000 genomes] |
| rs4298057 | 1.00[EUR][1000 genomes] |
| rs4373077 | 1.00[EUR][1000 genomes] |
| rs4508799 | 1.00[EUR][1000 genomes] |
| rs4568146 | 1.00[EUR][1000 genomes] |
| rs4596161 | 1.00[EUR][1000 genomes] |
| rs4596162 | 1.00[EUR][1000 genomes] |
| rs6773140 | 1.00[AMR][1000 genomes] |
| rs6781265 | 1.00[AMR][1000 genomes] |
| rs7427797 | 1.00[EUR][1000 genomes] |
| rs7611031 | 1.00[AMR][1000 genomes] |
| rs7611791 | 1.00[EUR][1000 genomes] |
| rs7623357 | 1.00[AMR][1000 genomes] |
| rs7625427 | 1.00[AMR][1000 genomes] |
| rs7643055 | 1.00[AMR][1000 genomes] |
| rs7645809 | 1.00[EUR][1000 genomes] |
| rs7653632 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002010 | chr3:67785913-68312064 | Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv834720 | chr3:67853167-68037201 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1009871 | chr3:67862617-68312064 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv536583 | chr3:67862617-68312064 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:67889800-67903400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
