Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1037821	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11916311	1.00[AMR][1000 genomes]
rs1459907	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1459910	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1459911	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1459916	0.95[AFR][1000 genomes]
rs17046854	1.00[EUR][1000 genomes]
rs1888089	1.00[EUR][1000 genomes]
rs1903238	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2100739	1.00[EUR][1000 genomes]
rs28727288	1.00[EUR][1000 genomes]
rs57976757	1.00[EUR][1000 genomes]
rs58416769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6773140	1.00[AMR][1000 genomes]
rs6781265	1.00[AMR][1000 genomes]
rs6798772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800777	1.00[EUR][1000 genomes]
rs7611031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7617482	1.00[EUR][1000 genomes]
rs7623357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634455	1.00[EUR][1000 genomes]
rs7643055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7649606	1.00[EUR][1000 genomes]
rs9681630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9833940	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67705600-67756200	Weak transcription	Aorta	Aorta
2	chr3:67705800-67776000	Weak transcription	Ovary	ovary
3	chr3:67721200-67759200	Weak transcription	Psoas Muscle	Psoas
4	chr3:67721400-67800400	Weak transcription	Left Ventricle	heart
5	chr3:67750800-67756600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:67751800-67757200	Weak transcription	Fetal Intestine Large	intestine
7	chr3:67754200-67763400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:67754400-67757200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:67754600-67755600	Enhancers	Liver	Liver
10	chr3:67754600-67757000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:67754600-67757400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:67754600-67757600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:67754800-67757000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:67754800-67757200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:67754800-67757200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:67755000-67755600	Enhancers	Primary B cells from peripheral blood	blood
17	chr3:67755000-67765600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:67755400-67757000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:67755400-67757200	Weak transcription	Colon Smooth Muscle	Colon

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