Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1037821	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11916311	1.00[AMR][1000 genomes]
rs1459910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1459911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1459916	0.88[AFR][1000 genomes]
rs17046854	1.00[EUR][1000 genomes]
rs1888089	1.00[EUR][1000 genomes]
rs1903238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2100739	1.00[EUR][1000 genomes]
rs28727288	1.00[EUR][1000 genomes]
rs57976757	1.00[EUR][1000 genomes]
rs58416769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6773140	1.00[AMR][1000 genomes]
rs6781265	1.00[AMR][1000 genomes]
rs6798772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800777	1.00[EUR][1000 genomes]
rs7611031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7617482	1.00[EUR][1000 genomes]
rs7623357	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625427	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634455	1.00[EUR][1000 genomes]
rs7643055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7649606	1.00[EUR][1000 genomes]
rs9681630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9833940	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67705800-67776000	Weak transcription	Ovary	ovary
2	chr3:67721400-67800400	Weak transcription	Left Ventricle	heart
3	chr3:67775000-67776000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:67775000-67778400	Weak transcription	Liver	Liver
5	chr3:67775800-67777000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:67775800-67777400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:67775800-67790200	Weak transcription	Psoas Muscle	Psoas

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