Variant report

Variant	rs6781265
Chromosome Location	chr3:67783908-67783909
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1037821	1.00[AMR][1000 genomes]
rs11916311	1.00[AMR][1000 genomes]
rs12630936	0.85[AFR][1000 genomes]
rs1459907	1.00[AMR][1000 genomes]
rs1459909	0.85[AFR][1000 genomes]
rs1459910	1.00[AMR][1000 genomes]
rs1459911	1.00[AMR][1000 genomes]
rs1459917	0.82[AFR][1000 genomes]
rs1903238	1.00[AMR][1000 genomes]
rs2169112	0.87[AFR][1000 genomes]
rs2362439	0.85[AFR][1000 genomes]
rs4856798	0.85[AFR][1000 genomes]
rs4856885	0.86[AFR][1000 genomes]
rs58416769	1.00[AMR][1000 genomes]
rs6548748	0.86[AFR][1000 genomes]
rs6773140	1.00[AMR][1000 genomes]
rs6798772	1.00[AMR][1000 genomes]
rs6800079	1.00[AMR][1000 genomes]
rs7611031	1.00[AMR][1000 genomes]
rs7617448	0.85[AFR][1000 genomes]
rs7623357	1.00[AMR][1000 genomes]
rs7625427	1.00[AMR][1000 genomes]
rs7637890	0.82[AFR][1000 genomes]
rs7643055	1.00[AMR][1000 genomes]
rs9681630	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67721400-67800400	Weak transcription	Left Ventricle	heart
2	chr3:67775800-67790200	Weak transcription	Psoas Muscle	Psoas
3	chr3:67783600-67784200	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr3:67783600-67784600	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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