Variant report

Variant	rs6773140
Chromosome Location	chr3:67821574-67821575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1037821	1.00[AMR][1000 genomes]
rs11916311	1.00[AMR][1000 genomes]
rs1459907	1.00[AMR][1000 genomes]
rs1459910	1.00[AMR][1000 genomes]
rs1459911	1.00[AMR][1000 genomes]
rs1903238	1.00[AMR][1000 genomes]
rs58416769	1.00[AMR][1000 genomes]
rs6781265	1.00[AMR][1000 genomes]
rs6798772	1.00[AMR][1000 genomes]
rs6800079	1.00[AMR][1000 genomes]
rs7611031	1.00[AMR][1000 genomes]
rs7623357	1.00[AMR][1000 genomes]
rs7625427	1.00[AMR][1000 genomes]
rs7643055	1.00[AMR][1000 genomes]
rs9681630	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67819000-67821800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:67819200-67821800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:67819200-67822400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:67819600-67821800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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