Variant report

Variant	rs7643055
Chromosome Location	chr3:67742452-67742453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1037821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11916311	1.00[AMR][1000 genomes]
rs1459907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1459910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1459911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046854	1.00[EUR][1000 genomes]
rs1888089	1.00[EUR][1000 genomes]
rs1903238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2100739	1.00[EUR][1000 genomes]
rs28727288	1.00[EUR][1000 genomes]
rs57976757	1.00[EUR][1000 genomes]
rs58416769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61756471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6773140	1.00[AMR][1000 genomes]
rs6781265	1.00[AMR][1000 genomes]
rs6798772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800777	1.00[EUR][1000 genomes]
rs7611031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7617482	1.00[EUR][1000 genomes]
rs7623357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634455	1.00[EUR][1000 genomes]
rs7649606	1.00[EUR][1000 genomes]
rs9681630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9833940	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv876922	chr3:67635506-67755257	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67705600-67756200	Weak transcription	Aorta	Aorta
2	chr3:67705800-67776000	Weak transcription	Ovary	ovary
3	chr3:67721200-67759200	Weak transcription	Psoas Muscle	Psoas
4	chr3:67721400-67800400	Weak transcription	Left Ventricle	heart
5	chr3:67727600-67747600	Weak transcription	A549	lung
6	chr3:67727800-67755000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:67737200-67749800	Weak transcription	Liver	Liver
8	chr3:67742000-67743200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:67742000-67743600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:67742200-67742600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:67742200-67743200	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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