Variant report

Variant	rs35667896
Chromosome Location	chr7:38791325-38791326
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:38777448..38781271-chr7:38790893..38794034,3	K562	blood:
2	chr7:38790727..38792284-chr7:38793430..38795338,2	MCF-7	breast:
3	chr7:38787332..38789165-chr7:38790853..38793676,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10085487	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10224856	0.91[EUR][1000 genomes]
rs10225415	0.91[EUR][1000 genomes]
rs10225550	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10229055	1.00[ASN][1000 genomes]
rs10232614	1.00[ASN][1000 genomes]
rs10239757	1.00[ASN][1000 genomes]
rs10239904	1.00[ASN][1000 genomes]
rs10242407	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254354	0.91[EUR][1000 genomes]
rs10254873	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10264217	1.00[ASN][1000 genomes]
rs10266279	1.00[ASN][1000 genomes]
rs10270427	1.00[AFR][1000 genomes]
rs10275873	1.00[ASN][1000 genomes]
rs10951574	0.91[EUR][1000 genomes]
rs11983387	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12701656	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12701657	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12701661	0.85[EUR][1000 genomes]
rs12701671	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13224619	0.85[EUR][1000 genomes]
rs13224857	0.85[EUR][1000 genomes]
rs13229445	0.85[EUR][1000 genomes]
rs13230196	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231372	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13235997	0.85[EUR][1000 genomes]
rs13236092	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238093	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040878	0.91[EUR][1000 genomes]
rs2079546	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2108508	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189854	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2190667	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2190668	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190670	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214667	0.91[EUR][1000 genomes]
rs2214668	0.91[EUR][1000 genomes]
rs2215032	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2245773	0.91[EUR][1000 genomes]
rs2286089	0.91[EUR][1000 genomes]
rs2286093	0.91[EUR][1000 genomes]
rs2286101	0.91[EUR][1000 genomes]
rs2392599	0.91[EUR][1000 genomes]
rs2392608	1.00[ASN][1000 genomes]
rs34349310	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34358406	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34621392	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34886315	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34997080	0.85[EUR][1000 genomes]
rs35400125	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35632362	0.88[AMR][1000 genomes]
rs35816439	0.85[EUR][1000 genomes]
rs35843038	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36004953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36114334	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36121032	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37476	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40445	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4720300	0.91[EUR][1000 genomes]
rs4723780	0.91[EUR][1000 genomes]
rs4723781	0.91[EUR][1000 genomes]
rs4723784	0.91[EUR][1000 genomes]
rs4723787	0.91[EUR][1000 genomes]
rs6462871	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6462874	1.00[ASN][1000 genomes]
rs6947695	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6949958	0.91[EUR][1000 genomes]
rs6951429	0.91[EUR][1000 genomes]
rs6964985	1.00[ASN][1000 genomes]
rs6967384	0.91[EUR][1000 genomes]
rs6971632	1.00[ASN][1000 genomes]
rs6974764	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6975410	0.91[EUR][1000 genomes]
rs6978805	1.00[ASN][1000 genomes]
rs6979423	1.00[AFR][1000 genomes]
rs71548633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73370730	0.85[EUR][1000 genomes]
rs7783723	1.00[ASN][1000 genomes]
rs7784065	1.00[ASN][1000 genomes]
rs7784609	1.00[ASN][1000 genomes]
rs7787423	0.91[EUR][1000 genomes]
rs7789864	1.00[ASN][1000 genomes]
rs7790054	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793250	1.00[ASN][1000 genomes]
rs7799887	1.00[ASN][1000 genomes]
rs7802052	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7803488	1.00[ASN][1000 genomes]
rs9638945	1.00[ASN][1000 genomes]
rs976352	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9886108	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35667896	FAM183B	cis	lung	GTEx
rs35667896	VPS41	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38749000-38803600	Weak transcription	Fetal Brain Male	brain
2	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
3	chr7:38759200-38810200	Weak transcription	A549	lung
4	chr7:38759400-38810600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:38760000-38799800	Weak transcription	HUVEC	blood vessel
6	chr7:38760600-38800200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:38761000-38820400	Weak transcription	Stomach Mucosa	stomach
8	chr7:38762600-38793200	Weak transcription	Hela-S3	cervix
9	chr7:38763200-38828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:38763400-38792600	Weak transcription	Small Intestine	intestine
11	chr7:38763400-38828800	Weak transcription	HepG2	liver
12	chr7:38763800-38791600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:38765400-38802800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:38766000-38791800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:38766600-38791600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:38767200-38792600	Weak transcription	Colonic Mucosa	Colon
17	chr7:38767200-38802800	Weak transcription	Right Ventricle	heart
18	chr7:38767200-38805800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:38768400-38791800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:38769800-38795000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:38774800-38816800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:38775800-38816600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr7:38776400-38792200	Weak transcription	Fetal Heart	heart
24	chr7:38777400-38800400	Strong transcription	Primary B cells from cord blood	blood
25	chr7:38779200-38792800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:38779800-38794800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:38780000-38792000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr7:38780800-38792800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:38780800-38803600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr7:38780800-38806000	Weak transcription	Fetal Brain Female	brain
31	chr7:38780800-38828800	Weak transcription	Gastric	stomach
32	chr7:38781400-38805800	Weak transcription	Brain Substantia Nigra	brain
33	chr7:38782600-38791400	Weak transcription	Brain Angular Gyrus	brain
34	chr7:38783000-38791400	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:38783200-38791400	Weak transcription	Ovary	ovary
36	chr7:38784000-38791400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr7:38784400-38805800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr7:38784600-38805800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr7:38784800-38791600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:38784800-38835000	Weak transcription	NHEK	skin
41	chr7:38785000-38791600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr7:38785000-38815800	Weak transcription	NHLF	lung
43	chr7:38785600-38834600	Weak transcription	HMEC	breast
44	chr7:38785600-38835000	Weak transcription	NH-A	brain
45	chr7:38786400-38792000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr7:38786600-38791400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:38786600-38791400	Weak transcription	Esophagus	oesophagus
48	chr7:38786600-38791400	Weak transcription	Left Ventricle	heart
49	chr7:38786600-38791400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr7:38786600-38791600	Weak transcription	Spleen	Spleen

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