The 2.0 version of rSNPBase

Variant report

Variant rs40445
Chromosome Location chr7:38857205-38857206
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:38793400-38861200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr7:38813800-38857400 Weak transcription HSMM muscle
3 chr7:38829400-38864400 Weak transcription Thymus Thymus
4 chr7:38829400-38864600 Weak transcription NHLF lung
5 chr7:38831000-38871200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr7:38831800-38867800 Weak transcription Fetal Thymus thymus
7 chr7:38832000-38857400 Weak transcription Lung lung
8 chr7:38833400-38859400 Weak transcription Spleen Spleen
9 chr7:38834400-38863400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr7:38835200-38865200 Weak transcription Rectal Smooth Muscle rectum
11 chr7:38835600-38857400 Weak transcription Ovary ovary
12 chr7:38835600-38857600 Weak transcription Adipose Nuclei Adipose
13 chr7:38835600-38862200 Weak transcription Primary T killer naive cells fromperipheralblood blood
14 chr7:38835600-38900800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr7:38835800-38858600 Weak transcription Primary T cells fromperipheralblood blood
16 chr7:38836400-38857400 Weak transcription Primary T regulatory cells fromperipheralblood blood
17 chr7:38839800-38871000 Weak transcription HUES64 Cell Line embryonic stem cell
18 chr7:38841000-38858200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr7:38842000-38865400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr7:38847400-38869800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr7:38847800-38862400 Weak transcription Brain Angular Gyrus brain
22 chr7:38847800-38866800 Weak transcription Brain Substantia Nigra brain
23 chr7:38848000-38861200 Weak transcription Brain Hippocampus Middle brain
24 chr7:38848200-38861800 Weak transcription Brain Anterior Caudate brain
25 chr7:38850200-38865400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr7:38850600-38869600 Weak transcription Stomach Mucosa stomach
27 chr7:38851600-38857600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr7:38851600-38867000 Weak transcription Gastric stomach
29 chr7:38851800-38862200 Weak transcription K562 blood
30 chr7:38852600-38860800 Strong transcription Monocytes-CD14+_RO01746 blood
31 chr7:38852800-38857600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr7:38852800-38858600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr7:38852800-38858800 Strong transcription Primary hematopoietic stem cells short term culture blood
34 chr7:38853000-38861000 Strong transcription Primary B cells from peripheral blood blood
35 chr7:38853000-38863600 Weak transcription ES-I3 Cell Line embryonic stem cell
36 chr7:38853200-38859400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr7:38853400-38860800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr7:38853600-38859600 Strong transcription Breast Myoepithelial Primary Cells Breast
39 chr7:38854000-38858200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
40 chr7:38854000-38870400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr7:38854400-38860600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr7:38854400-38861400 Weak transcription Primary T helper naive cells from peripheral blood blood
43 chr7:38854600-38858400 Strong transcription Left Ventricle heart
44 chr7:38854800-38857800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr7:38854800-38859000 Strong transcription Fetal Stomach stomach
46 chr7:38855200-38857400 Strong transcription Rectal Mucosa Donor 31 rectum
47 chr7:38855200-38857400 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr7:38855200-38857800 Strong transcription Cortex derived primary cultured neurospheres brain
49 chr7:38855200-38858000 Strong transcription Liver Liver
50 chr7:38855200-38858200 Strong transcription Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015