Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:108022146..108024976-chr7:108095353..108098019,2	MCF-7	breast:
2	chr7:108018473..108020878-chr7:108021691..108023261,2	MCF-7	breast:
3	chr7:108019480..108021624-chr7:108021812..108023878,2	MCF-7	breast:
4	chr7:108019353..108022320-chr7:108026421..108029053,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091129	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1016149	0.85[EUR][1000 genomes]
rs12531089	0.84[EUR][1000 genomes]
rs12539530	0.85[EUR][1000 genomes]
rs12539964	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13230316	0.86[EUR][1000 genomes]
rs13244715	0.89[EUR][1000 genomes]
rs1990712	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2080489	0.86[EUR][1000 genomes]
rs2216259	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2284286	0.89[EUR][1000 genomes]
rs2284287	0.86[EUR][1000 genomes]
rs2284288	0.89[EUR][1000 genomes]
rs2300027	0.85[EUR][1000 genomes]
rs2395961	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2395962	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34427132	0.85[EUR][1000 genomes]
rs36063908	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56102707	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6948554	0.84[EUR][1000 genomes]
rs6975557	0.85[EUR][1000 genomes]
rs7804045	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1030425	chr7:107910716-108041036	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108014000-108023400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:108014800-108043200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:108016800-108023400	Weak transcription	Brain Angular Gyrus	brain
4	chr7:108017000-108023200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:108018400-108023400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:108018400-108023400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:108020000-108034200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:108021000-108022400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr7:108021000-108022600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:108021400-108022200	Weak transcription	Pancreas	Pancrea
11	chr7:108021400-108023400	Weak transcription	Brain Anterior Caudate	brain
12	chr7:108021400-108040800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:108021400-108043000	Weak transcription	HMEC	breast
14	chr7:108021800-108025000	Weak transcription	A549	lung
15	chr7:108021800-108026600	Weak transcription	HUVEC	blood vessel

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