Variant report

Variant	rs35674456
Chromosome Location	chr3:150032652-150032653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150030571..150033361-chr3:150126551..150128588,2	K562	blood:
2	chr20:40153235..40155669-chr3:150032514..150035381,2	MCF-7	breast:
3	chr3:150031134..150033723-chr3:150086992..150089751,2	MCF-7	breast:
4	chr3:150028795..150040018-chr3:150059749..150069074,18	MCF-7	breast:
5	chr3:150030302..150032833-chr3:150035753..150037262,2	K562	blood:
6	chr3:150020231..150040124-chr3:150123959..150134634,58	MCF-7	breast:
7	chr3:149955631..149959972-chr3:150029866..150036855,6	MCF-7	breast:
8	chr3:150030871..150035431-chr3:150125176..150128492,6	MCF-7	breast:
9	chr3:150029719..150032688-chr3:150130200..150132021,2	MCF-7	breast:
10	chr3:150029498..150034450-chr3:150035240..150039174,8	MCF-7	breast:
11	chr3:150024123..150026153-chr3:150031429..150033031,2	K562	blood:
12	chr3:150032292..150033945-chr3:150042030..150044960,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction
ENSG00000244541	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28573339	0.89[ASN][1000 genomes]
rs56145517	0.89[ASN][1000 genomes]
rs62269235	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73003243	0.88[ASN][1000 genomes]
rs9917701	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150027200-150034400	Enhancers	Fetal Lung	lung
2	chr3:150027200-150035200	Weak transcription	NHDF-Ad	bronchial
3	chr3:150028800-150036000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:150030800-150034000	Enhancers	Stomach Mucosa	stomach
5	chr3:150031200-150033000	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr3:150031200-150033200	Enhancers	Fetal Intestine Small	intestine
7	chr3:150031200-150033400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr3:150031200-150033800	Enhancers	Fetal Heart	heart
9	chr3:150031400-150034000	Enhancers	Fetal Intestine Large	intestine
10	chr3:150031400-150034000	Enhancers	Pancreas	Pancrea
11	chr3:150031400-150034200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr3:150031600-150033600	Weak transcription	Esophagus	oesophagus
13	chr3:150032000-150033000	Enhancers	Duodenum Mucosa	Duodenum
14	chr3:150032000-150034000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:150032200-150032800	Enhancers	Hela-S3	cervix
16	chr3:150032200-150033000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:150032200-150033000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:150032200-150033000	Enhancers	Placenta	Placenta
19	chr3:150032200-150034000	Enhancers	Fetal Muscle Leg	muscle
20	chr3:150032400-150033000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:150032400-150033000	Enhancers	Brain Germinal Matrix	brain
22	chr3:150032400-150033000	Enhancers	Osteobl	bone
23	chr3:150032600-150033000	Enhancers	HUVEC	blood vessel
24	chr3:150032600-150033000	Enhancers	K562	blood
25	chr3:150032600-150033800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr3:150032600-150035400	Weak transcription	NHLF	lung

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