Variant report

Variant	rs62269235
Chromosome Location	chr3:150035703-150035704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150034078..150036042-chr3:150087927..150090147,2	MCF-7	breast:
2	chr3:150033100..150035076-chr3:150035676..150037565,2	MCF-7	breast:
3	chr3:150033113..150037399-chr3:150086580..150091176,6	MCF-7	breast:
4	chr3:150016269..150019049-chr3:150033525..150035964,2	K562	blood:
5	chr3:150035480..150037883-chr3:150125164..150130581,5	MCF-7	breast:
6	chr3:150034801..150039393-chr3:150040930..150043727,5	MCF-7	breast:
7	chr3:150028795..150040018-chr3:150059749..150069074,18	MCF-7	breast:
8	chr3:150025051..150027446-chr3:150034118..150036350,3	K562	blood:
9	chr3:150033272..150039330-chr3:150061780..150068166,12	MCF-7	breast:
10	chr3:150020231..150040124-chr3:150123959..150134634,58	MCF-7	breast:
11	chr3:149955631..149959972-chr3:150029866..150036855,6	MCF-7	breast:
12	chr3:150029498..150034450-chr3:150035240..150039174,8	MCF-7	breast:
13	chr3:150034469..150037197-chr3:150047170..150048985,3	MCF-7	breast:
14	chr3:150025747..150027446-chr3:150034175..150036350,2	K562	blood:
15	chr3:149956017..149956661-chr3:150035058..150035762,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction
ENSG00000244541	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11715936	0.80[AMR][1000 genomes]
rs28573339	0.91[ASN][1000 genomes]
rs35674456	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56145517	0.91[ASN][1000 genomes]
rs73003243	0.90[ASN][1000 genomes]
rs7628720	0.81[AMR][1000 genomes]
rs9917701	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150028800-150036000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:150032800-150037000	Weak transcription	Hela-S3	cervix
3	chr3:150033000-150037200	Weak transcription	Osteobl	bone
4	chr3:150033000-150037600	Weak transcription	HUVEC	blood vessel
5	chr3:150033000-150041400	Weak transcription	Placenta	Placenta
6	chr3:150033200-150037600	Weak transcription	Fetal Intestine Small	intestine
7	chr3:150033800-150053000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:150034000-150037200	Weak transcription	Stomach Mucosa	stomach
9	chr3:150034000-150037600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:150034000-150037600	Weak transcription	Fetal Intestine Large	intestine
11	chr3:150034200-150037400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:150034200-150037600	Weak transcription	HSMMtube	muscle
13	chr3:150034400-150041600	Weak transcription	Fetal Lung	lung
14	chr3:150034800-150037400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:150035000-150035800	Enhancers	Liver	Liver
16	chr3:150035000-150036200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:150035200-150039400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr3:150035400-150035800	Weak transcription	NHDF-Ad	bronchial
19	chr3:150035400-150036200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:150035400-150037800	Enhancers	NHLF	lung
21	chr3:150035600-150036000	Flanking Active TSS	A549	lung
22	chr3:150035600-150036200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:150035600-150037600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:150035600-150042400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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