Variant report

Variant	rs35679067
Chromosome Location	chr4:88373852-88373853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88023177..88025115-chr4:88372900..88374503,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11097154	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097155	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11934698	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13134730	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13134914	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13143137	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13143153	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34208894	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34239468	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35856555	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6531990	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6837468	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6842852	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6844669	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71607425	0.82[EUR][1000 genomes]
rs71607431	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71607432	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71607434	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71607435	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7689678	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1011882	chr4:88363959-88402477	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88344400-88398600	Weak transcription	Gastric	stomach
2	chr4:88345200-88400000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:88345200-88416400	Weak transcription	Colonic Mucosa	Colon
4	chr4:88345400-88378800	Weak transcription	A549	lung
5	chr4:88346200-88382600	Weak transcription	NHLF	lung
6	chr4:88346400-88379400	Weak transcription	Small Intestine	intestine
7	chr4:88346600-88410400	Weak transcription	Esophagus	oesophagus
8	chr4:88349000-88375400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:88349400-88381800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:88350600-88380600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:88351200-88379000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:88351400-88382400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr4:88351600-88414600	Weak transcription	Psoas Muscle	Psoas
14	chr4:88352600-88387200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr4:88353400-88377000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:88354800-88381600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr4:88356000-88377600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:88356400-88376400	Strong transcription	Liver	Liver
19	chr4:88356400-88377200	Weak transcription	Fetal Brain Male	brain
20	chr4:88356600-88382000	Weak transcription	Brain Germinal Matrix	brain
21	chr4:88357600-88380000	Weak transcription	Brain Angular Gyrus	brain
22	chr4:88357800-88381600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr4:88359800-88382200	Weak transcription	Fetal Brain Female	brain
24	chr4:88360400-88381800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:88361200-88383000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr4:88363400-88375600	Weak transcription	Colon Smooth Muscle	Colon
27	chr4:88363400-88380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:88363600-88374400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr4:88364400-88375400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr4:88364400-88377400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr4:88364400-88379000	Weak transcription	Brain Substantia Nigra	brain
32	chr4:88364800-88377400	Weak transcription	HepG2	liver
33	chr4:88364800-88382800	Weak transcription	HMEC	breast
34	chr4:88365000-88380800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr4:88365000-88403400	Weak transcription	Right Ventricle	heart
36	chr4:88365200-88381800	Weak transcription	HUVEC	blood vessel
37	chr4:88366000-88381400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr4:88366600-88379000	Weak transcription	Fetal Kidney	kidney
39	chr4:88366600-88382400	Weak transcription	Fetal Heart	heart
40	chr4:88367400-88380800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr4:88367400-88381600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr4:88367800-88377400	Weak transcription	Pancreas	Pancrea
43	chr4:88368800-88375400	Strong transcription	Fetal Intestine Small	intestine
44	chr4:88369400-88376400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr4:88370200-88376600	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr4:88370200-88380200	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr4:88370400-88374000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:88370400-88375800	Strong transcription	Fetal Thymus	thymus
49	chr4:88370600-88375600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:88371000-88374200	Strong transcription	Primary T cells fromperipheralblood	blood

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