Variant report

Variant	rs35856555
Chromosome Location	chr4:88331648-88331649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr4:88330415-88332369	HEK293	kidney:	n/a	n/a
2	TCF12	chr4:88330348-88331797	A549	lung:	n/a	n/a
3	RCOR1	chr4:88331406-88331648	K562	blood:	n/a	n/a
4	KAP1	chr4:88330302-88332262	HEK293	kidney:	n/a	n/a
5	KAP1	chr4:88330287-88332199	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88329509..88332282-chr4:88332311..88334966,2	MCF-7	breast:
2	chr4:88310329..88313185-chr4:88330457..88332566,2	K562	blood:

Variant related genes	Relation type
ENSG00000249262	TF binding region
ENSG00000251716	TF binding region
ENSG00000198189	Chromatin interaction
ENSG00000251716	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11097154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11097155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11934698	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12644152	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13134730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13143137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13143153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34208894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34239468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35679067	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6531989	0.92[AFR][1000 genomes]
rs6531990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6837468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6842852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6844669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71607425	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71607431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71607432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71607434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71607435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7689678	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88327200-88332400	Enhancers	Fetal Intestine Small	intestine
2	chr4:88327600-88332400	Enhancers	Fetal Intestine Large	intestine
3	chr4:88329400-88332400	Enhancers	Liver	Liver
4	chr4:88329600-88342600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:88330000-88331800	Enhancers	Stomach Mucosa	stomach
6	chr4:88330200-88332200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr4:88330200-88332400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:88330600-88332000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr4:88330600-88332000	Enhancers	K562	blood
10	chr4:88330800-88332000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:88331000-88332400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:88331000-88332600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:88331200-88331800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:88331200-88332000	Enhancers	Fetal Lung	lung
15	chr4:88331200-88332200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:88331400-88331800	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr4:88331400-88332000	Enhancers	Small Intestine	intestine
18	chr4:88331400-88332200	Enhancers	HepG2	liver
19	chr4:88331600-88332200	Enhancers	Osteobl	bone
20	chr4:88331600-88332400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:88331600-88332400	Enhancers	Duodenum Mucosa	Duodenum

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