Variant report

Variant	rs35685585
Chromosome Location	chr4:95217841-95217842
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13112528	0.82[AMR][1000 genomes]
rs13132963	0.82[AMR][1000 genomes]
rs13135934	0.82[AMR][1000 genomes]
rs17310526	0.82[AMR][1000 genomes]
rs17376488	0.81[AMR][1000 genomes]
rs17623135	0.82[AMR][1000 genomes]
rs34711938	0.81[AMR][1000 genomes]
rs35361491	0.81[AMR][1000 genomes]
rs66581998	0.82[AMR][1000 genomes]
rs67552174	0.81[AMR][1000 genomes]
rs8026	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95158200-95225800	Weak transcription	Stomach Mucosa	stomach
2	chr4:95185200-95226800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:95204800-95220000	Weak transcription	K562	blood
4	chr4:95205400-95225000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:95206000-95219800	Weak transcription	NHEK	skin
6	chr4:95207800-95219800	Weak transcription	Fetal Intestine Large	intestine
7	chr4:95208200-95227200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:95208800-95218600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:95208800-95227200	Weak transcription	Left Ventricle	heart
10	chr4:95210000-95228600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:95211400-95220000	Weak transcription	HMEC	breast
12	chr4:95211400-95220200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:95212200-95219800	Weak transcription	HepG2	liver
14	chr4:95212800-95228800	Weak transcription	A549	lung
15	chr4:95213200-95219800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:95213200-95219800	Weak transcription	Liver	Liver
17	chr4:95213600-95218600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:95213800-95220200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:95214200-95219800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr4:95214200-95220000	Weak transcription	Fetal Intestine Small	intestine
21	chr4:95214200-95226600	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:95214200-95226800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:95214200-95226800	Weak transcription	Osteobl	bone
24	chr4:95214200-95227600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:95214400-95219800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:95214400-95220600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:95214400-95223200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr4:95214400-95223600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:95214400-95224800	Weak transcription	HSMM	muscle
30	chr4:95214400-95226400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:95214400-95226400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr4:95214400-95226800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:95214400-95227000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:95214400-95227600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr4:95216000-95220000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:95217200-95227600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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